PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1hw1a2  (  79 )    glniletlarldhesvpqlidnLlsvRtniSTiFIrtAFrq--hpdkAqe
d2hs5a2  (  94 )                    aedIteLYicRrvvEcaGVngFdpatgdlsrVae
                                     aaaaaaaaaaaaaaaaaaa         aaaaa

                             60        70        80        90        100 
d1hw1a2  ( 127 )    vLatAneva--dhadaFAelDYnIFrgLAfASgnpiyGliLngMkgLYTr
d2hs5a2  ( 128 )    aLdlAderyavedwtgVGtAdIhFHsALAslnnsnridel-rsvwneArl
                    aaa          aaaaaaaaaaaaaaaa     aaaaa   aaaaaaaa

                             110       120       130       140       150 
d1hw1a2  ( 175 )    IgrhyFanpeArslAlgFYhkLsaLCsega--qvyetVrrYGheSgeiwh
d2hs5a2  ( 178 )    vfhvdda-hrfHgpYltrNheIydaLaagnteaAGqlLktYLedAeaqil
                    aaa     aaaaaaaaaaaaaaaaaaa      aaaaaaaaaaaaaaaaa

                         
d1hw1a2  ( 225 )    rmqnl
d2hs5a2  ( 228 )    gayr 
                    a

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1hw1a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1hw1a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Fatty acid responsive transcription factor FadR, C-terminal domain	GntR ligand-binding domain-like	Escherichia coli [TaxId: 562]		view
d2hs5a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2hs5a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Putative transcriptional regulator RHA1_ro03477	GntR ligand-binding domain-like	Rhodococcus sp. RHA1 [TaxId: 101510]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1hw1a2	A	P0A8V6	GO:0000062
d1hw1a2	A	P0A8V6	GO:0003677
d1hw1a2	A	P0A8V6	GO:0003700
d1hw1a2	A	P0A8V6	GO:0005737
d1hw1a2	A	P0A8V6	GO:0005829
d1hw1a2	A	P0A8V6	GO:0006355
d1hw1a2	A	P0A8V6	GO:0006631
d1hw1a2	A	P0A8V6	GO:0019217
d1hw1a2	A	P0A8V6	GO:0042803
d1hw1a2	A	P0A8V6	GO:0045723
d1hw1a2	A	P0A8V6	GO:0045892
d1hw1a2	A	P0A8V6	GO:0045893
d2hs5a2	A	Q0SB06	GO:0003677
d2hs5a2	A	Q0SB06	GO:0003700
d2hs5a2	A	Q0SB06	GO:0006355

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