PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1aepa-  (   6 )           nIaeaVqqLnhtIvnAaheLheTlgLptpdeAlnlLteqAnaF
d1eq1a-  (   1 )    dapaggnafeemEkhAkefqktFseqFnslvnskntqdfnkalKdgSDsv
                             aaaaaaaaaaaaaaaaaa             aaaaaaaaaa

                             60        70        80        90        100 
d1aepa-  (  49 )    ktkIaeVTtsLkqeAekhqgsvaeqLnaFArnLnnsIhdAAtsl-----n
d1eq1a-  (  51 )    lqqlsaFSsslqgaisdAngkAkealeqArqnvektAeelrkahpdveke
                    aaaaaaaaaaaaaaa      aaaaaaaaaaaaaa               

                             110       120       130       140       150 
d1aepa-  (  94 )    lqdQlnsLqsALtnVghqWqdIatktqasaqeaWapVqsaLqeAAekTke
d1eq1a-  ( 101 )    anafkdklqaavqttvqeSqklAkevasnmeetnkklapKikqAYddFvk
                        aaaaaaaaaaaaaaaaaaaaaaa       333aaaaaaaaaaaaa

                             160    
d1aepa-  ( 144 )    aAanLqnsIqsavqk 
d1eq1a-  ( 151 )    hAeevqkklheaatkq
                    aaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1aepa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1aepa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Apolipophorin-III	Apolipophorin-III	Migratory locust (Locusta migratoria) [TaxId: 7004]		view
d1eq1a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1eq1a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Apolipophorin-III	Apolipophorin-III	Tobacco hornworm (Manduca sexta) [TaxId: 7130]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1eq1a_	A	P13276	GO:0005576
d1eq1a_	A	P13276	GO:0006869
d1eq1a_	A	P13276	GO:0008289

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D	A	P	A	G	G	N	A	F	E	E	M	E	K	H	A	K	E	F	Q	K	T	F	S	E	Q	F	N	S	L	V	N	S	K	N	T	Q	D	F	N	K	A	L	K	D	G	S	D	S	V	L	Q	Q	L	S	A	F	S	S	S	L	Q	G	A	I	S	D	A	N	G	K	A	K	E	A	L	E	Q	A	R	Q	N	V	E	K	T	A	E	E	L	R	K	A	H	P	D	V	E	K	E	A	N	A	F	K	D	K	L	Q	A	A	V	Q	T	T	V	Q	E	S	Q	K	L	A	K	E	V	A	S	N	M	E	E	T	N	K	K	L	A	P	K	I	K	Q	A	Y	D	D	F	V	K	H	A	E	E	V	Q	K	K	L	H	E	A	A	T	K	Q

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