PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3kasa3  ( 609 )     ldyerynsqLlsfVrdLnqyr----adIkeMglsLqwLysArgdFfrAT
d5o5ta3  ( 594 )    pfdCrdyAvvLrkyAdkIysiSmkhpqemktysVsFdsLfsAVknFteiA
                         aaaaaaaaaaaaa                  aaaaaaaaaaaaaa

                             60        70        80        90        100 
d3kasa3  ( 654 )    srLttdfgnAektdrfvmkkLndrvmrveyhFlSpyvspkespfrhVFwg
d5o5ta3  ( 644 )    skFserlqdfdksnpivlrmMndqlmfLeraFidplGLpdrpfyrhVIyA
                    aaaaaaaaa     aaaaaaaaaaaaa                       

                             110       120       130       140       150 
d3kasa3  ( 704 )    s------gshTLpaLlenLklrkqnng--afnetlFrnQlalatwTIqgA
d5o5ta3  ( 694 )    psshnkyagesFPgIydaLfdIe-skvdpskaWgeVkrQIyvAafTVqaA
                                aaaaaaa             aaaaaaaaaaaaaaaaaa

                             160 
d3kasa3  ( 746 )    AnaLsgdvwdi
d5o5ta3  ( 743 )    AetLseva   
                    aa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d3kasa3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3kasa3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Transferrin receptor ectodomain, C-terminal domain	Transferrin receptor-like dimerisation domain	Human (Homo sapiens) [TaxId: 9606]		view
d5o5ta3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5o5ta3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Glutamate carboxypeptidase II	Transferrin receptor-like dimerisation domain	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160
-	L	D	Y	E	R	Y	N	S	Q	L	L	S	F	V	R	D	L	N	Q	Y	R	-	-	-	-	A	D	I	K	E	M	G	L	S	L	Q	W	L	Y	S	A	R	G	D	F	F	R	A	T	S	R	L	T	T	D	F	G	N	A	E	K	T	D	R	F	V	M	K	K	L	N	D	R	V	M	R	V	E	Y	H	F	L	S	P	Y	V	S	P	K	E	S	P	F	R	H	V	F	W	G	S	-	-	-	-	-	-	G	S	H	T	L	P	A	L	L	E	N	L	K	L	R	K	Q	N	N	G	-	-	A	F	N	E	T	L	F	R	N	Q	L	A	L	A	T	W	T	I	Q	G	A	A	N	A	L	S	G	D	V	W	D	I
P	F	D	C	R	D	Y	A	V	V	L	R	K	Y	A	D	K	I	Y	S	I	S	M	K	H	P	Q	E	M	K	T	Y	S	V	S	F	D	S	L	F	S	A	V	K	N	F	T	E	I	A	S	K	F	S	E	R	L	Q	D	F	D	K	S	N	P	I	V	L	R	M	M	N	D	Q	L	M	F	L	E	R	A	F	I	D	P	L	G	L	P	D	R	P	F	Y	R	H	V	I	Y	A	P	S	S	H	N	K	Y	A	G	E	S	F	P	G	I	Y	D	A	L	F	D	I	E	-	S	K	V	D	P	S	K	A	W	G	E	V	K	R	Q	I	Y	V	A	A	F	T	V	Q	A	A	A	E	T	L	S	E	V	A	-	-	-

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160
-	L	D	Y	E	R	Y	N	S	Q	L	L	S	F	V	R	D	L	N	Q	Y	R	-	-	-	-	A	D	I	K	E	M	G	L	S	L	Q	W	L	Y	S	A	R	G	D	F	F	R	A	T	S	R	L	T	T	D	F	G	N	A	E	K	T	D	R	F	V	M	K	K	L	N	D	R	V	M	R	V	E	Y	H	F	L	S	P	Y	V	S	P	K	E	S	P	F	R	H	V	F	W	G	S	-	-	-	-	-	-	G	S	H	T	L	P	A	L	L	E	N	L	K	L	R	K	Q	N	N	G	-	-	A	F	N	E	T	L	F	R	N	Q	L	A	L	A	T	W	T	I	Q	G	A	A	N	A	L	S	G	D	V	W	D	I
P	F	D	C	R	D	Y	A	V	V	L	R	K	Y	A	D	K	I	Y	S	I	S	M	K	H	P	Q	E	M	K	T	Y	S	V	S	F	D	S	L	F	S	A	V	K	N	F	T	E	I	A	S	K	F	S	E	R	L	Q	D	F	D	K	S	N	P	I	V	L	R	M	M	N	D	Q	L	M	F	L	E	R	A	F	I	D	P	L	G	L	P	D	R	P	F	Y	R	H	V	I	Y	A	P	S	S	H	N	K	Y	A	G	E	S	F	P	G	I	Y	D	A	L	F	D	I	E	-	S	K	V	D	P	S	K	A	W	G	E	V	K	R	Q	I	Y	V	A	A	F	T	V	Q	A	A	A	E	T	L	S	E	V	A	-	-	-

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160
-	L	D	Y	E	R	Y	N	S	Q	L	L	S	F	V	R	D	L	N	Q	Y	R	-	-	-	-	A	D	I	K	E	M	G	L	S	L	Q	W	L	Y	S	A	R	G	D	F	F	R	A	T	S	R	L	T	T	D	F	G	N	A	E	K	T	D	R	F	V	M	K	K	L	N	D	R	V	M	R	V	E	Y	H	F	L	S	P	Y	V	S	P	K	E	S	P	F	R	H	V	F	W	G	S	-	-	-	-	-	-	G	S	H	T	L	P	A	L	L	E	N	L	K	L	R	K	Q	N	N	G	-	-	A	F	N	E	T	L	F	R	N	Q	L	A	L	A	T	W	T	I	Q	G	A	A	N	A	L	S	G	D	V	W	D	I
P	F	D	C	R	D	Y	A	V	V	L	R	K	Y	A	D	K	I	Y	S	I	S	M	K	H	P	Q	E	M	K	T	Y	S	V	S	F	D	S	L	F	S	A	V	K	N	F	T	E	I	A	S	K	F	S	E	R	L	Q	D	F	D	K	S	N	P	I	V	L	R	M	M	N	D	Q	L	M	F	L	E	R	A	F	I	D	P	L	G	L	P	D	R	P	F	Y	R	H	V	I	Y	A	P	S	S	H	N	K	Y	A	G	E	S	F	P	G	I	Y	D	A	L	F	D	I	E	-	S	K	V	D	P	S	K	A	W	G	E	V	K	R	Q	I	Y	V	A	A	F	T	V	Q	A	A	A	E	T	L	S	E	V	A	-	-	-

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160
-	L	D	Y	E	R	Y	N	S	Q	L	L	S	F	V	R	D	L	N	Q	Y	R	-	-	-	-	A	D	I	K	E	M	G	L	S	L	Q	W	L	Y	S	A	R	G	D	F	F	R	A	T	S	R	L	T	T	D	F	G	N	A	E	K	T	D	R	F	V	M	K	K	L	N	D	R	V	M	R	V	E	Y	H	F	L	S	P	Y	V	S	P	K	E	S	P	F	R	H	V	F	W	G	S	-	-	-	-	-	-	G	S	H	T	L	P	A	L	L	E	N	L	K	L	R	K	Q	N	N	G	-	-	A	F	N	E	T	L	F	R	N	Q	L	A	L	A	T	W	T	I	Q	G	A	A	N	A	L	S	G	D	V	W	D	I
P	F	D	C	R	D	Y	A	V	V	L	R	K	Y	A	D	K	I	Y	S	I	S	M	K	H	P	Q	E	M	K	T	Y	S	V	S	F	D	S	L	F	S	A	V	K	N	F	T	E	I	A	S	K	F	S	E	R	L	Q	D	F	D	K	S	N	P	I	V	L	R	M	M	N	D	Q	L	M	F	L	E	R	A	F	I	D	P	L	G	L	P	D	R	P	F	Y	R	H	V	I	Y	A	P	S	S	H	N	K	Y	A	G	E	S	F	P	G	I	Y	D	A	L	F	D	I	E	-	S	K	V	D	P	S	K	A	W	G	E	V	K	R	Q	I	Y	V	A	A	F	T	V	Q	A	A	A	E	T	L	S	E	V	A	-	-	-