PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3buxb2  (  48 )    pgtVdkkmVekCwklMdkVvrlCqnpkLalknsppyIldlLpdTyqhLrt
d3vrna1  (  12 )      weearaLgrAvrmLqrLeeqcv-------vsppslrdLLprTAqLLre
                         aaaaaaaaaaaaaaaaa              aaaaaaaaaaaaaa

                             60        70        80        90        100 
d3buxb2  (  98 )    IlsrYe-----gkmetLGeneyFrvFMenLmkkTkqTislfkeGkerMye
d3vrna1  (  58 )    VahsrraaggggpggpggSgdfLliYLanLeakSrqVaallpp-------
                    aaaa              a aaaaaaaaaaaaaaaaaaaa          

                             110       120       130   
d3buxb2  ( 143 )    ensqPrrnLtklsliFshmlaeLkgiFpsGlfqgd
d3vrna1  ( 115 )    --srlrrqlakLaiiFshMhaeLhalFpgGkycgh
                       aaaaaaaaaaaaaaaaaaaaaaa 333

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d3buxb2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3buxb2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	N-terminal domain of cbl (N-cbl)	N-terminal domain of cbl (N-cbl)	Human (Homo sapiens) [TaxId: 9606]		view
d3vrna1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3vrna1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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P	G	T	V	D	K	K	M	V	E	K	C	W	K	L	M	D	K	V	V	R	L	C	Q	N	P	K	L	A	L	K	N	S	P	P	Y	I	L	D	L	L	P	D	T	Y	Q	H	L	R	T	I	L	S	R	Y	E	-	-	-	-	-	G	K	M	E	T	L	G	E	N	E	Y	F	R	V	F	M	E	N	L	M	K	K	T	K	Q	T	I	S	L	F	K	E	G	K	E	R	M	Y	E	E	N	S	Q	P	R	R	N	L	T	K	L	S	L	I	F	S	H	M	L	A	E	L	K	G	I	F	P	S	G	L	F	Q	G	D
-	-	W	E	E	A	R	A	L	G	R	A	V	R	M	L	Q	R	L	E	E	Q	C	V	-	-	-	-	-	-	-	V	S	P	P	S	L	R	D	L	L	P	R	T	A	Q	L	L	R	E	V	A	H	S	R	R	A	A	G	G	G	G	P	G	G	P	G	G	S	G	D	F	L	L	I	Y	L	A	N	L	E	A	K	S	R	Q	V	A	A	L	L	P	P	-	-	-	-	-	-	-	-	-	S	R	L	R	R	Q	L	A	K	L	A	I	I	F	S	H	M	H	A	E	L	H	A	L	F	P	G	G	K	Y	C	G	H

Member	Chain	UniProtKB	GO term
d3buxb2	B	P08581	GO:0001784
d3buxb2	B	P08581	GO:0004842
d3buxb2	B	P08581	GO:0005509
d3buxb2	B	P08581	GO:0007166
d3buxb2	B	P08581	GO:0023051
d3buxb2	B	P22681	GO:0001784
d3buxb2	B	P22681	GO:0004842
d3buxb2	B	P22681	GO:0005509
d3buxb2	B	P22681	GO:0007166
d3buxb2	B	P22681	GO:0023051

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P	G	T	V	D	K	K	M	V	E	K	C	W	K	L	M	D	K	V	V	R	L	C	Q	N	P	K	L	A	L	K	N	S	P	P	Y	I	L	D	L	L	P	D	T	Y	Q	H	L	R	T	I	L	S	R	Y	E	-	-	-	-	-	G	K	M	E	T	L	G	E	N	E	Y	F	R	V	F	M	E	N	L	M	K	K	T	K	Q	T	I	S	L	F	K	E	G	K	E	R	M	Y	E	E	N	S	Q	P	R	R	N	L	T	K	L	S	L	I	F	S	H	M	L	A	E	L	K	G	I	F	P	S	G	L	F	Q	G	D
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P	G	T	V	D	K	K	M	V	E	K	C	W	K	L	M	D	K	V	V	R	L	C	Q	N	P	K	L	A	L	K	N	S	P	P	Y	I	L	D	L	L	P	D	T	Y	Q	H	L	R	T	I	L	S	R	Y	E	-	-	-	-	-	G	K	M	E	T	L	G	E	N	E	Y	F	R	V	F	M	E	N	L	M	K	K	T	K	Q	T	I	S	L	F	K	E	G	K	E	R	M	Y	E	E	N	S	Q	P	R	R	N	L	T	K	L	S	L	I	F	S	H	M	L	A	E	L	K	G	I	F	P	S	G	L	F	Q	G	D
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P	G	T	V	D	K	K	M	V	E	K	C	W	K	L	M	D	K	V	V	R	L	C	Q	N	P	K	L	A	L	K	N	S	P	P	Y	I	L	D	L	L	P	D	T	Y	Q	H	L	R	T	I	L	S	R	Y	E	-	-	-	-	-	G	K	M	E	T	L	G	E	N	E	Y	F	R	V	F	M	E	N	L	M	K	K	T	K	Q	T	I	S	L	F	K	E	G	K	E	R	M	Y	E	E	N	S	Q	P	R	R	N	L	T	K	L	S	L	I	F	S	H	M	L	A	E	L	K	G	I	F	P	S	G	L	F	Q	G	D
-	-	W	E	E	A	R	A	L	G	R	A	V	R	M	L	Q	R	L	E	E	Q	C	V	-	-	-	-	-	-	-	V	S	P	P	S	L	R	D	L	L	P	R	T	A	Q	L	L	R	E	V	A	H	S	R	R	A	A	G	G	G	G	P	G	G	P	G	G	S	G	D	F	L	L	I	Y	L	A	N	L	E	A	K	S	R	Q	V	A	A	L	L	P	P	-	-	-	-	-	-	-	-	-	S	R	L	R	R	Q	L	A	K	L	A	I	I	F	S	H	M	H	A	E	L	H	A	L	F	P	G	G	K	Y	C	G	H