Superfamily : 47661 [ t-snare proteins ]
Class : All alpha proteins
Fold : STAT-like
# of Members : 5
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1ez3a-  (  26 )    rdrfmdeffeqVeeIrgfIdkIaeNVeeVkrkhsailaspnpd--ektke
d1fioa-  (  30 )     mhdfvgFmnkIsqInrdLdkYdhTInqVdsLHkrlltevneeqashlrh
d1hs7a-  (  23 )    tnqktkelsnlietFaeqSrvlekECtkiGs--k--------rdskelRy
d1vcsa1  (   8 )            egyeqdFavltaeitskiarvprlpp--------dekkqmva
d4dnda-  (   5 )            dpffvvrgeVqkavntarglyqrwcele-------eldwTtn
                              aaaaaaaaaaaaaaaaaa                 aaaaa

                             60        70        80        90        100 
d1ez3a-  (  74 )    ele-elmsdIkktAnkVrsklksieqsIeqeeglnrssadLriRktqhst
d1fioa-  (  79 )    sLd-nfvaqAtdlqfkLkneIksAqrdGih----------dtnkqaqAen
d1hs7a-  (  63 )    kietelipnCtsvrdkiesnilih---------------qngklsadFkn
d1vcsa1  (  42 )    nve-kqleeArelleqMdlevreipp------------qsrgmysnrMrs
d4dnda-  (  49 )    elr-nglrsIewdLedleetigivean-pgkfklp---------agdlqe
                    aaa aaaaaaaaaaaaaaaaaaaa                  aaaaaaaa

                             110       120       130       140       150 
d1ez3a-  ( 123 )    Lsrkfvevmseynatqsdyrerckgri                       
d1fioa-  ( 118 )    SrqrFlklIqdYrivDsnykeenkeqakrqymiiqpeAtedeveaAisdv
d1hs7a-  (  98 )    lktkYqslqqsYnqrkslfplk                            
d1vcsa1  (  79 )    ykqeMgkletdFkrsria                                
d4dnda-  (  88 )    rkvFVe-rreaVqekdhvs                               
                    aaaaaaaaaaaaa                                     

                             160       170       180       190       200 
d1ez3a-                                                               
d1fioa-  ( 168 )    ggqqifsqalleaktalaevqarhqellkleksmaeLtqlfndMeelVie
d1hs7a-                                                               
d1vcsa1                                                               
d4dnda-                                                               
                                                                      

                      
d1ez3a-               
d1fioa-  ( 224 )    qq
d1hs7a-               
d1vcsa1               
d4dnda-
 

 

Domain IDNameFamilySourceDomainSTRING-DB
Syntaxin 1A N-terminal domaint-snare proteinsNorway rat (Rattus norvegicus) [TaxId: 10116]view
Sso1t-snare proteinsBaker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]view
Vam3p N-terminal domaint-snare proteinsBaker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]view
Vesicle transport v-SNARE protein Vti1-like 2t-snare proteinsMouse (Mus musculus) [TaxId: 10090]view
automated matchest-snare proteinsHuman (Homo sapiens) [TaxId: 9606]view

 

No outliers

FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200
R D R F M D E F F E Q V E E I R G F I D K I A E N V E E V K R K H S A I L A S P N P D - - E K T K E E L E - E L M S D I K K T A N K V R S K L K S I E Q S I E Q E E G L N R S S A D L R I R K T Q H S T L S R K F V E V M S E Y N A T Q S D Y R E R C K G R I - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- M H D F V G F M N K I S Q I N R D L D K Y D H T I N Q V D S L H K R L L T E V N E E Q A S H L R H S L D - N F V A Q A T D L Q F K L K N E I K S A Q R D G I H - - - - - - - - - - D T N K Q A Q A E N S R Q R F L K L I Q D Y R I V D S N Y K E E N K E Q A K R Q Y M I I Q P E A T E D E V E A A I S D V G G Q Q I F S Q A L L E A K T A L A E V Q A R H Q E L L K L E K S M A E L T Q L F N D M E E L V I E Q Q
T N Q K T K E L S N L I E T F A E Q S R V L E K E C T K I G S - - K - - - - - - - - R D S K E L R Y K I E T E L I P N C T S V R D K I E S N I L I H - - - - - - - - - - - - - - - Q N G K L S A D F K N L K T K Y Q S L Q Q S Y N Q R K S L F P L K - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - E G Y E Q D F A V L T A E I T S K I A R V P R L P P - - - - - - - - D E K K Q M V A N V E - K Q L E E A R E L L E Q M D L E V R E I P P - - - - - - - - - - - - Q S R G M Y S N R M R S Y K Q E M G K L E T D F K R S R I A - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - D P F F V V R G E V Q K A V N T A R G L Y Q R W C E L E - - - - - - - E L D W T T N E L R - N G L R S I E W D L E D L E E T I G I V E A N - P G K F K L P - - - - - - - - - A G D L Q E R K V F V E - R R E A V Q E K D H V S - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

 

 

 

 

 

Member Chain UniProtKB GO term
d1ez3a_ A P32851 GO:0016020
d1ez3a_ A P32851 GO:0016192
d1fioa_ A P32867 GO:0016020
d1fioa_ A P32867 GO:0016192
d1hs7a_ A Q12241 GO:0016020
d1hs7a_ A Q12241 GO:0016192
d1vcsa1 A O89116 GO:0006886
d1vcsa1 A O89116 GO:0016020
d1vcsa1 A O89116 GO:0016192
 
Contact: Prof. R. Sowdhamini - mini@ncbs.res.in