PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1b3qa1  ( 293 )    sqtvrvd----------------iekldnlmdlmgelviarsriletlkk
d2c2aa1  ( 232 )           menvteskelerlkridrmktefianIshelrtPltaikayae
d5b1na-  ( 231 )                          addrtllmagvshdlrtpltrirlaTem
                                             aaaaaaaaaaaa aaaaaaaa    

                             60        70        80        90     
d1b3qa1  ( 327 )    y-----------nikeldeslshlsriTldlqnvVmkir       
d2c2aa1  ( 275 )    tiynslgeldlstlkefleviidqsnhlenLlnelldfsrlerksl
d5b1na-  ( 259 )    ms------------eqdgylaesinkdieecnaiieqfidylr   
                                     aaaaaaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1b3qa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1b3qa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Histidine kinase CheA	Homodimeric domain of signal transducing histidine kinase	Thermotoga maritima [TaxId: 2336]	view
d2c2aa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2c2aa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Sensor histidine kinase TM0853	Homodimeric domain of signal transducing histidine kinase	Thermotoga maritima [TaxId: 2336]	view
d5b1na- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5b1na- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Homodimeric domain of signal transducing histidine kinase	Escherichia coli [TaxId: 562]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1b3qa1	A	Q56310	GO:0000155
d1b3qa1	A	Q56310	GO:0000160
d1b3qa1	A	Q56310	GO:0004673
d1b3qa1	A	Q56310	GO:0005737
d1b3qa1	A	Q56310	GO:0006935
d1b3qa1	A	Q56310	GO:0007165
d1b3qa1	A	Q56310	GO:0016310
d1b3qa1	A	Q56310	GO:0016772
d1b3qa1	A	Q56310	GO:0000155
d1b3qa1	A	Q56310	GO:0000160
d1b3qa1	A	Q56310	GO:0004673
d1b3qa1	A	Q56310	GO:0005737
d1b3qa1	A	Q56310	GO:0006935
d1b3qa1	A	Q56310	GO:0007165
d1b3qa1	A	Q56310	GO:0016310
d1b3qa1	A	Q56310	GO:0016772
d2c2aa1	A	Q9WZV7	GO:0000155
d2c2aa1	A	Q9WZV7	GO:0007165
d2c2aa1	A	Q9WZV7	GO:0016310
d2c2aa1	A	Q9WZV7	GO:0016772
d2c2aa1	A	Q9WZV7	GO:0000155
d2c2aa1	A	Q9WZV7	GO:0007165
d2c2aa1	A	Q9WZV7	GO:0016310
d2c2aa1	A	Q9WZV7	GO:0016772
d2c2aa1	A	Q9WZV7	GO:0000155
d2c2aa1	A	Q9WZV7	GO:0007165
d2c2aa1	A	Q9WZV7	GO:0016310
d2c2aa1	A	Q9WZV7	GO:0016772

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