Superfamily : 47095 [ HMG-box ]
Class : All alpha proteins
Fold : HMG-box
# of Members : 16
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1ckta-  (   8 )                     pgkm-----ssyafFvqtcreehkpavn----f
d1k99a1  (   2 )           kklkkhpdfpkkpl-----tpyfrffmekrakYaklHpems-n
d1lefa-  (   1 )                  mhikkpl-----nafmlYmkemranVvaestlke-s
d1v63a1  (   8 )                    pkkPpm----nGyqkfsqellsnge--lnhlp-l
d1v64a1  (   8 )           qlkdkfdgrPtkPpp----nSyslYcaelman----mkdvp-s
d1wgfa1  (   8 )       kpsqeggkggsekpkrpv-----samfiFseekrrqlqeerpels-e
d1wz6a1  (   8 )                    arrpm-----nafllFCkrhrslvrqehprld-n
d2crja1  (   8 )                    pkapv-----tGyvrFlnerreqirtrhpdlp-f
d2ctoa1  (   8 )                 mpnrkasr-----nAyyffvqekipelrrrglpvarv
d2e6oa1  (   8 )          gtvsatspnkckrpm-----nafmlFakkyrveYtqmypgkd-n
d2gzka1  (  87 )                  napkrpp-----safflFcseyrpkikgehpgls-i
d2hdza-  (   4 )                   lpespk-----raeeiwqqsvigdylarfkn-d-r
d2mrca-  (   1 )    mahhhhhhmkkkdplapkralsaymfyvkdkrleiikekpe---lakd-v
                                               aaaaaaaaaaaaa         a

                             60        70        80        90        100 
d1ckta-  (  38 )    sefskkCserwktmsakekgkFedmaa-dkaryeremkty          
d1k99a1  (  39 )    ldltkilskkykelpekkkmkyiqdFqrekqefer---nlarf-----re
d1lefa-  (  31 )    aaInqiLgrrwhalsreeqakYyelarkerqlhmqlypgwsar-----dn
d1v63a1  (  35 )    kermveigsrwqrisqsqkehykklAeeqqrqykvhldlwvkslspqdra
d1v64a1  (  42 )    termvlCsqqwkllsqkekdayhkkcdqkkkdyevellrfleslpeeeqq
d1wgfa1  (  49 )    seltrllarmwndlsekkkakykareaalkaqser------k        
d1wz6a1  (  36 )    rgAtkiladwwavldpkekqkYtdmakeykdafmkanpgy-r        
d2crja1  (  36 )    peitkmlgaewsklqpaekqryldeAekekqqylkelwayq---qseayk
d2ctoa1  (  40 )    adAipyCssdwallreeekekyaemArewrAaq--------gk-----dp
d2e6oa1  (  46 )    raisvilgdrwkkmkneerrmYtleAkalaeeqkrlnpdcwk        
d2gzka1  ( 117 )    gdvakklgemwnntaaddkqpyekkaaklkekyekdiaayra--------
d2hdza-  (  32 )    vkAlkaMemtwnnmekkeklmwikkaaedqkryerel--s          
d2mrca-  (  47 )    aqvgkligeawgqlspaqkapyekkaqldkvryskeieeyrkknq-----
                    aaaaaaaaaaaa   aaaaaaaaaaaaaaaaaaa                

                             110 
d1ckta-                        
d1k99a1  (  81 )    dhpdliqnakk
d1lefa-  (  76 )    ygkkkkrkrek
d1v63a1  (  85 )    aykeyisnkrk
d1v64a1  (  92 )    rvlgeekmlni
d1wgfa1                        
d1wz6a1                        
d2crja1  (  83 )    vcte       
d2ctoa1  (  77 )    gpsekqkpvft
d2e6oa1                        
d2gzka1  ( 159 )    ----------k
d2hdza-                        
d2mrca-  (  92 )    ---e
 

 

Domain IDNameFamilySourceDomainSTRING-DB
High mobility group protein 1, HMG1HMG-boxNorway rat (Rattus norvegicus) [TaxId: 10116]view
Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1)HMG-boxHuman (Homo sapiens) [TaxId: 9606]view
automated matchesHMG-boxMouse (Mus musculus) [TaxId: 10090]view
Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1)HMG-boxMouse (Mus musculus) [TaxId: 10090]view
Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1)HMG-boxMouse (Mus musculus) [TaxId: 10090]view
Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1)HMG-boxMouse (Mus musculus) [TaxId: 10090]view
automated matchesautomated matchesMouse (Mus musculus) [TaxId: 10090]view
automated matchesautomated matchesMouse (Mus musculus) [TaxId: 10090]view
automated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]view
automated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]view
High mobility group protein 1, HMG1HMG-boxChinese hamster (Cricetulus griseus) [TaxId: 10029]view
automated matchesHMG-boxHuman (Homo sapiens) [TaxId: 9606]view
automated matchesautomated matchesPlasmodium falciparum [TaxId: 36329]view
Domain ID Name
d2d7la12d7l A:8-75
d6l34a-6l34 A:
d7jjka-7jjk A:
FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110
- - - - - - - - - - - - - - - - - P G K M - - - - - S S Y A F F V Q T C R E E H K P A V N - - - - F S E F S K K C S E R W K T M S A K E K G K F E D M A A - D K A R Y E R E M K T Y - - - - - - - - - - - - - - - - - - - - -
- - - - - - - K K L K K H P D F P K K P L - - - - - T P Y F R F F M E K R A K Y A K L H P E M S - N L D L T K I L S K K Y K E L P E K K K M K Y I Q D F Q R E K Q E F E R - - - N L A R F - - - - - R E D H P D L I Q N A K K
- - - - - - - - - - - - - - M H I K K P L - - - - - N A F M L Y M K E M R A N V V A E S T L K E - S A A I N Q I L G R R W H A L S R E E Q A K Y Y E L A R K E R Q L H M Q L Y P G W S A R - - - - - D N Y G K K K K R K R E K
- - - - - - - - - - - - - - - - P K K P P M - - - - N G Y Q K F S Q E L L S N G E - - L N H L P - L K E R M V E I G S R W Q R I S Q S Q K E H Y K K L A E E Q Q R Q Y K V H L D L W V K S L S P Q D R A A Y K E Y I S N K R K
- - - - - - - Q L K D K F D G R P T K P P P - - - - N S Y S L Y C A E L M A N - - - - M K D V P - S T E R M V L C S Q Q W K L L S Q K E K D A Y H K K C D Q K K K D Y E V E L L R F L E S L P E E E Q Q R V L G E E K M L N I
- - - K P S Q E G G K G G S E K P K R P V - - - - - S A M F I F S E E K R R Q L Q E E R P E L S - E S E L T R L L A R M W N D L S E K K K A K Y K A R E A A L K A Q S E R - - - - - - K - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - A R R P M - - - - - N A F L L F C K R H R S L V R Q E H P R L D - N R G A T K I L A D W W A V L D P K E K Q K Y T D M A K E Y K D A F M K A N P G Y - R - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - P K A P V - - - - - T G Y V R F L N E R R E Q I R T R H P D L P - F P E I T K M L G A E W S K L Q P A E K Q R Y L D E A E K E K Q Q Y L K E L W A Y Q - - - Q S E A Y K V C T E - - - - - - -
- - - - - - - - - - - - - M P N R K A S R - - - - - N A Y Y F F V Q E K I P E L R R R G L P V A R V A D A I P Y C S S D W A L L R E E E K E K Y A E M A R E W R A A Q - - - - - - - - G K - - - - - D P G P S E K Q K P V F T
- - - - - - G T V S A T S P N K C K R P M - - - - - N A F M L F A K K Y R V E Y T Q M Y P G K D - N R A I S V I L G D R W K K M K N E E R R M Y T L E A K A L A E E Q K R L N P D C W K - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - N A P K R P P - - - - - S A F F L F C S E Y R P K I K G E H P G L S - I G D V A K K L G E M W N N T A A D D K Q P Y E K K A A K L K E K Y E K D I A A Y R A - - - - - - - - - - - - - - - - - - K
- - - - - - - - - - - - - - - L P E S P K - - - - - R A E E I W Q Q S V I G D Y L A R F K N - D - R V K A L K A M E M T W N N M E K K E K L M W I K K A A E D Q K R Y E R E L - - S - - - - - - - - - - - - - - - - - - - - -
M A H H H H H H M K K K D P L A P K R A L S A Y M F Y V K D K R L E I I K E K P E - - - L A K D - V A Q V G K L I G E A W G Q L S P A Q K A P Y E K K A Q L D K V R Y S K E I E E Y R K K N Q - - - - - - - - E - - - - - - -

 

 

 

 

 

Member Chain UniProtKB GO term
d1ckta_ A P63159 GO:0003677
d1ckta_ A P63159 GO:0005634
d1ckta_ A P63159 GO:0003677
d1ckta_ A P63159 GO:0005634
 
Contact: Prof. R. Sowdhamini - mini@ncbs.res.in