PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1nrea-  (  17 )    geeFrmeklnqlwekAqrlhlppvrlaelhadlkiqErdelawkklkldg
d2fcwa1  ( 216 )     aefeeprVidLwdlAqsAnltdkeleafreeLkhFeakiekhnhyqkql
                          aaaaaaaaaaa     aaaaaaaaaaaaaaaaaaaaaaaaaaa 

                             60        70        80        90        100 
d1nrea-  (  67 )    lDe-----------------------------dgekearlirnlnvilak
d2fcwa1  ( 265 )    eiaheklrhaesvgdgervsrsrekhallegrTkelgytvkkhlqdLsgr
                                                       aaaaaaaaaaaaaaa

                             110 
d1nrea-  (  88 )    Ygldgkkdar
d2fcwa1  ( 315 )    Israrh    
                    a

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1nrea- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1nrea- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	alpha-2-Macroglobulin receptor associated protein (RAP)	RAP domain	Human (Homo sapiens) [TaxId: 9606]		view
d2fcwa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2fcwa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	alpha-2-Macroglobulin receptor associated protein (RAP)	RAP domain	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110
G	E	E	F	R	M	E	K	L	N	Q	L	W	E	K	A	Q	R	L	H	L	P	P	V	R	L	A	E	L	H	A	D	L	K	I	Q	E	R	D	E	L	A	W	K	K	L	K	L	D	G	L	D	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	D	G	E	K	E	A	R	L	I	R	N	L	N	V	I	L	A	K	Y	G	L	D	G	K	K	D	A	R
-	A	E	F	E	E	P	R	V	I	D	L	W	D	L	A	Q	S	A	N	L	T	D	K	E	L	E	A	F	R	E	E	L	K	H	F	E	A	K	I	E	K	H	N	H	Y	Q	K	Q	L	E	I	A	H	E	K	L	R	H	A	E	S	V	G	D	G	E	R	V	S	R	S	R	E	K	H	A	L	L	E	G	R	T	K	E	L	G	Y	T	V	K	K	H	L	Q	D	L	S	G	R	I	S	R	A	R	H	-	-	-	-

Member	Chain	UniProtKB	GO term
d1nrea_	A	P30533	GO:0048019
d1nrea_	A	P30533	GO:0050750
d2fcwa1	A	P30533	GO:0005783
d2fcwa1	A	P30533	GO:0008201
d2fcwa1	A	P30533	GO:0048019
d2fcwa1	A	P30533	GO:0050750
d2fcwa1	A	P01130	GO:0005783
d2fcwa1	A	P01130	GO:0008201
d2fcwa1	A	P01130	GO:0048019
d2fcwa1	A	P01130	GO:0050750
d2fcwa1	A	P30533	GO:0005783
d2fcwa1	A	P30533	GO:0008201
d2fcwa1	A	P30533	GO:0048019
d2fcwa1	A	P30533	GO:0050750
d2fcwa1	A	P01130	GO:0005783
d2fcwa1	A	P01130	GO:0008201
d2fcwa1	A	P01130	GO:0048019
d2fcwa1	A	P01130	GO:0050750

									10										20										30										40										50										60										70										80										90										100										110
G	E	E	F	R	M	E	K	L	N	Q	L	W	E	K	A	Q	R	L	H	L	P	P	V	R	L	A	E	L	H	A	D	L	K	I	Q	E	R	D	E	L	A	W	K	K	L	K	L	D	G	L	D	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	D	G	E	K	E	A	R	L	I	R	N	L	N	V	I	L	A	K	Y	G	L	D	G	K	K	D	A	R
-	A	E	F	E	E	P	R	V	I	D	L	W	D	L	A	Q	S	A	N	L	T	D	K	E	L	E	A	F	R	E	E	L	K	H	F	E	A	K	I	E	K	H	N	H	Y	Q	K	Q	L	E	I	A	H	E	K	L	R	H	A	E	S	V	G	D	G	E	R	V	S	R	S	R	E	K	H	A	L	L	E	G	R	T	K	E	L	G	Y	T	V	K	K	H	L	Q	D	L	S	G	R	I	S	R	A	R	H	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110
G	E	E	F	R	M	E	K	L	N	Q	L	W	E	K	A	Q	R	L	H	L	P	P	V	R	L	A	E	L	H	A	D	L	K	I	Q	E	R	D	E	L	A	W	K	K	L	K	L	D	G	L	D	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	D	G	E	K	E	A	R	L	I	R	N	L	N	V	I	L	A	K	Y	G	L	D	G	K	K	D	A	R
-	A	E	F	E	E	P	R	V	I	D	L	W	D	L	A	Q	S	A	N	L	T	D	K	E	L	E	A	F	R	E	E	L	K	H	F	E	A	K	I	E	K	H	N	H	Y	Q	K	Q	L	E	I	A	H	E	K	L	R	H	A	E	S	V	G	D	G	E	R	V	S	R	S	R	E	K	H	A	L	L	E	G	R	T	K	E	L	G	Y	T	V	K	K	H	L	Q	D	L	S	G	R	I	S	R	A	R	H	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110
G	E	E	F	R	M	E	K	L	N	Q	L	W	E	K	A	Q	R	L	H	L	P	P	V	R	L	A	E	L	H	A	D	L	K	I	Q	E	R	D	E	L	A	W	K	K	L	K	L	D	G	L	D	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	D	G	E	K	E	A	R	L	I	R	N	L	N	V	I	L	A	K	Y	G	L	D	G	K	K	D	A	R
-	A	E	F	E	E	P	R	V	I	D	L	W	D	L	A	Q	S	A	N	L	T	D	K	E	L	E	A	F	R	E	E	L	K	H	F	E	A	K	I	E	K	H	N	H	Y	Q	K	Q	L	E	I	A	H	E	K	L	R	H	A	E	S	V	G	D	G	E	R	V	S	R	S	R	E	K	H	A	L	L	E	G	R	T	K	E	L	G	Y	T	V	K	K	H	L	Q	D	L	S	G	R	I	S	R	A	R	H	-	-	-	-