PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1hbka-  (   0 )    hmaqvFeeCvsfinglprtinlpnelkldlykyykQStignCnikepsah
d2cb8a-  (   2 )     sqaefekAaeevrhLk--tkpsdeemlfiyGhykQAtvgdInterpgml
d5ijma1  (   1 )    msaadfeaAvayvrslpegpVldnaAklqFySlykQAtegdVtgsqpwav
                         aaaaaaa           aaaaaaaaaaaaaaa            

                             60        70        80        90  
d1hbka-  (  50 )    kyidrkkyeaWksvenlnredAQkrYvdiVseifp---yWqd
d2cb8a-  (  49 )    dftgkakwdaWnelkgtskedAmkaYinkVeeLkkkygi   
d5ijma1  (  53 )    qvearakwdawnsckgms-edAkaaYVrrLltlLrsqgiwpg
                     aaaaaaaaaaa       aaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1hbka- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1hbka- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Acyl-CoA binding protein	Acyl-CoA binding protein	Malaria parasite (Plasmodium falciparum) [TaxId: 5833]	view
d2cb8a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2cb8a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Acyl-CoA binding protein	Human (Homo sapiens) [TaxId: 9606]	view
d5ijma1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5ijma1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Leishmania major [TaxId: 5664]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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H	M	A	Q	V	F	E	E	C	V	S	F	I	N	G	L	P	R	T	I	N	L	P	N	E	L	K	L	D	L	Y	K	Y	Y	K	Q	S	T	I	G	N	C	N	I	K	E	P	S	A	H	K	Y	I	D	R	K	K	Y	E	A	W	K	S	V	E	N	L	N	R	E	D	A	Q	K	R	Y	V	D	I	V	S	E	I	F	P	-	-	-	Y	W	Q	D
-	S	Q	A	E	F	E	K	A	A	E	E	V	R	H	L	K	-	-	T	K	P	S	D	E	E	M	L	F	I	Y	G	H	Y	K	Q	A	T	V	G	D	I	N	T	E	R	P	G	M	L	D	F	T	G	K	A	K	W	D	A	W	N	E	L	K	G	T	S	K	E	D	A	M	K	A	Y	I	N	K	V	E	E	L	K	K	K	Y	G	I	-	-	-
M	S	A	A	D	F	E	A	A	V	A	Y	V	R	S	L	P	E	G	P	V	L	D	N	A	A	K	L	Q	F	Y	S	L	Y	K	Q	A	T	E	G	D	V	T	G	S	Q	P	W	A	V	Q	V	E	A	R	A	K	W	D	A	W	N	S	C	K	G	M	S	-	E	D	A	K	A	A	Y	V	R	R	L	L	T	L	L	R	S	Q	G	I	W	P	G

Member	Chain	UniProtKB	GO term
d1hbka_	A	Q8IK57	GO:0000062
d1hbka_	A	Q8IK57	GO:0006631
d1hbka_	A	Q8IK57	GO:0008289

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-	S	Q	A	E	F	E	K	A	A	E	E	V	R	H	L	K	-	-	T	K	P	S	D	E	E	M	L	F	I	Y	G	H	Y	K	Q	A	T	V	G	D	I	N	T	E	R	P	G	M	L	D	F	T	G	K	A	K	W	D	A	W	N	E	L	K	G	T	S	K	E	D	A	M	K	A	Y	I	N	K	V	E	E	L	K	K	K	Y	G	I	-	-	-
M	S	A	A	D	F	E	A	A	V	A	Y	V	R	S	L	P	E	G	P	V	L	D	N	A	A	K	L	Q	F	Y	S	L	Y	K	Q	A	T	E	G	D	V	T	G	S	Q	P	W	A	V	Q	V	E	A	R	A	K	W	D	A	W	N	S	C	K	G	M	S	-	E	D	A	K	A	A	Y	V	R	R	L	L	T	L	L	R	S	Q	G	I	W	P	G

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-	S	Q	A	E	F	E	K	A	A	E	E	V	R	H	L	K	-	-	T	K	P	S	D	E	E	M	L	F	I	Y	G	H	Y	K	Q	A	T	V	G	D	I	N	T	E	R	P	G	M	L	D	F	T	G	K	A	K	W	D	A	W	N	E	L	K	G	T	S	K	E	D	A	M	K	A	Y	I	N	K	V	E	E	L	K	K	K	Y	G	I	-	-	-
M	S	A	A	D	F	E	A	A	V	A	Y	V	R	S	L	P	E	G	P	V	L	D	N	A	A	K	L	Q	F	Y	S	L	Y	K	Q	A	T	E	G	D	V	T	G	S	Q	P	W	A	V	Q	V	E	A	R	A	K	W	D	A	W	N	S	C	K	G	M	S	-	E	D	A	K	A	A	Y	V	R	R	L	L	T	L	L	R	S	Q	G	I	W	P	G

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-	S	Q	A	E	F	E	K	A	A	E	E	V	R	H	L	K	-	-	T	K	P	S	D	E	E	M	L	F	I	Y	G	H	Y	K	Q	A	T	V	G	D	I	N	T	E	R	P	G	M	L	D	F	T	G	K	A	K	W	D	A	W	N	E	L	K	G	T	S	K	E	D	A	M	K	A	Y	I	N	K	V	E	E	L	K	K	K	Y	G	I	-	-	-
M	S	A	A	D	F	E	A	A	V	A	Y	V	R	S	L	P	E	G	P	V	L	D	N	A	A	K	L	Q	F	Y	S	L	Y	K	Q	A	T	E	G	D	V	T	G	S	Q	P	W	A	V	Q	V	E	A	R	A	K	W	D	A	W	N	S	C	K	G	M	S	-	E	D	A	K	A	A	Y	V	R	R	L	L	T	L	L	R	S	Q	G	I	W	P	G