PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1e2aa-  (   1 )    mnreeMtllGfeIvayAgdArskLleAlkaAengdfakAdsLvveAgscI
d3k1sa1  (   3 )       ttaeqipfqLilnSgnArsfA-eAlqfakqgk-aeAdea-vkAkeai
                           aaaaaaaaaaaaaaaa   aaaaaa     aaaa   aaaaaa

                             60        70        80        90        100 
d1e2aa-  (  51 )    aeAhssqtgmlareasgeelpySvtmmhGqdhLmtTillkdvIhhlIely
d3k1sa1  (  50 )    neAhhfqteliqseargekteisvllihAqdhl-nAitvkelAaefidly
                    aaaaaaaaaaaaaaa        aaaaaaaaa   aaaaaaaaaaaaaaa

                           
d1e2aa-  ( 101 )    kr     
d3k1sa1  ( 100 )    kkleakg

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1e2aa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1e2aa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Enzyme IIa from lactose specific PTS, IIa-lac	Enzyme IIa from lactose specific PTS, IIa-lac	Lactococcus lactis [TaxId: 1358]		view
d3k1sa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3k1sa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	N	R	E	E	M	T	L	L	G	F	E	I	V	A	Y	A	G	D	A	R	S	K	L	L	E	A	L	K	A	A	E	N	G	D	F	A	K	A	D	S	L	V	V	E	A	G	S	C	I	A	E	A	H	S	S	Q	T	G	M	L	A	R	E	A	S	G	E	E	L	P	Y	S	V	T	M	M	H	G	Q	D	H	L	M	T	T	I	L	L	K	D	V	I	H	H	L	I	E	L	Y	K	R	-	-	-	-	-
-	-	-	T	T	A	E	Q	I	P	F	Q	L	I	L	N	S	G	N	A	R	S	F	A	-	E	A	L	Q	F	A	K	Q	G	K	-	A	E	A	D	E	A	-	V	K	A	K	E	A	I	N	E	A	H	H	F	Q	T	E	L	I	Q	S	E	A	R	G	E	K	T	E	I	S	V	L	L	I	H	A	Q	D	H	L	-	N	A	I	T	V	K	E	L	A	A	E	F	I	D	L	Y	K	K	L	E	A	K	G

Member	Chain	UniProtKB	GO term
d1e2aa_	A	P23532	GO:0005737
d1e2aa_	A	P23532	GO:0009401
d1e2aa_	A	P23532	GO:0016740
d1e2aa_	A	P23532	GO:0046872

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M	N	R	E	E	M	T	L	L	G	F	E	I	V	A	Y	A	G	D	A	R	S	K	L	L	E	A	L	K	A	A	E	N	G	D	F	A	K	A	D	S	L	V	V	E	A	G	S	C	I	A	E	A	H	S	S	Q	T	G	M	L	A	R	E	A	S	G	E	E	L	P	Y	S	V	T	M	M	H	G	Q	D	H	L	M	T	T	I	L	L	K	D	V	I	H	H	L	I	E	L	Y	K	R	-	-	-	-	-
-	-	-	T	T	A	E	Q	I	P	F	Q	L	I	L	N	S	G	N	A	R	S	F	A	-	E	A	L	Q	F	A	K	Q	G	K	-	A	E	A	D	E	A	-	V	K	A	K	E	A	I	N	E	A	H	H	F	Q	T	E	L	I	Q	S	E	A	R	G	E	K	T	E	I	S	V	L	L	I	H	A	Q	D	H	L	-	N	A	I	T	V	K	E	L	A	A	E	F	I	D	L	Y	K	K	L	E	A	K	G

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M	N	R	E	E	M	T	L	L	G	F	E	I	V	A	Y	A	G	D	A	R	S	K	L	L	E	A	L	K	A	A	E	N	G	D	F	A	K	A	D	S	L	V	V	E	A	G	S	C	I	A	E	A	H	S	S	Q	T	G	M	L	A	R	E	A	S	G	E	E	L	P	Y	S	V	T	M	M	H	G	Q	D	H	L	M	T	T	I	L	L	K	D	V	I	H	H	L	I	E	L	Y	K	R	-	-	-	-	-
-	-	-	T	T	A	E	Q	I	P	F	Q	L	I	L	N	S	G	N	A	R	S	F	A	-	E	A	L	Q	F	A	K	Q	G	K	-	A	E	A	D	E	A	-	V	K	A	K	E	A	I	N	E	A	H	H	F	Q	T	E	L	I	Q	S	E	A	R	G	E	K	T	E	I	S	V	L	L	I	H	A	Q	D	H	L	-	N	A	I	T	V	K	E	L	A	A	E	F	I	D	L	Y	K	K	L	E	A	K	G

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M	N	R	E	E	M	T	L	L	G	F	E	I	V	A	Y	A	G	D	A	R	S	K	L	L	E	A	L	K	A	A	E	N	G	D	F	A	K	A	D	S	L	V	V	E	A	G	S	C	I	A	E	A	H	S	S	Q	T	G	M	L	A	R	E	A	S	G	E	E	L	P	Y	S	V	T	M	M	H	G	Q	D	H	L	M	T	T	I	L	L	K	D	V	I	H	H	L	I	E	L	Y	K	R	-	-	-	-	-
-	-	-	T	T	A	E	Q	I	P	F	Q	L	I	L	N	S	G	N	A	R	S	F	A	-	E	A	L	Q	F	A	K	Q	G	K	-	A	E	A	D	E	A	-	V	K	A	K	E	A	I	N	E	A	H	H	F	Q	T	E	L	I	Q	S	E	A	R	G	E	K	T	E	I	S	V	L	L	I	H	A	Q	D	H	L	-	N	A	I	T	V	K	E	L	A	A	E	F	I	D	L	Y	K	K	L	E	A	K	G