PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1cxzb-  (  13 )    wsLleqlglagadlaapgvqqqLelererLrreirkelklkegAenlrra
d4nkgb-  ( 126 )                             svaglekqlaielkvkqgAenmiqt
                                               aaaaaaaaaaaaaaaaaaaaaaa

                             60        70        80        
d1cxzb-  (  63 )    ttdlg----rslgpvelllrgSsrrldlLhqqlqeLhah
d4nkgb-  ( 152 )    ysn-gstkdrllltAqqmlqdSktkidiirmqlrralqa
                                aaaaaaaaaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1cxzb- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1cxzb- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Protein kinase c-like 1, pkn/prk1	HR1 repeat	Human (Homo sapiens) [TaxId: 9606]		view
d4nkgb- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4nkgb- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	HR1 repeat	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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W	S	L	L	E	Q	L	G	L	A	G	A	D	L	A	A	P	G	V	Q	Q	Q	L	E	L	E	R	E	R	L	R	R	E	I	R	K	E	L	K	L	K	E	G	A	E	N	L	R	R	A	T	T	D	L	G	-	-	-	-	R	S	L	G	P	V	E	L	L	L	R	G	S	S	R	R	L	D	L	L	H	Q	Q	L	Q	E	L	H	A	H
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Member	Chain	UniProtKB	GO term
d1cxzb_	B	P61586	GO:0007165
d1cxzb_	B	Q16512	GO:0007165

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	V	A	G	L	E	K	Q	L	A	I	E	L	K	V	K	Q	G	A	E	N	M	I	Q	T	Y	S	N	-	G	S	T	K	D	R	L	L	L	T	A	Q	Q	M	L	Q	D	S	K	T	K	I	D	I	I	R	M	Q	L	R	R	A	L	Q	A

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