PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1grja1  (   2 )    q-aipmtlrgAeklreeldflksvrrpeIiaaIaeArehgdlkenaeyha
d2f23a1  (   3 )     revkltkagyerlmqqLerEr-erlqeatkilqelmessddyddsglea
d2p4va1  (   1 )    mktplvtregyeklkqelnylwreerpeVtkkvtwAaslgdrsenadyqy
                        bb aaaaaaaaaaaaaaa  aaaaaaaaaaaaa        aaaaa

                             60        70        
d1grja1  (  51 )    areqqgfcegrIkdIeaklsnAqvidvtk
d2f23a1  (  51 )    akqekarIearIdslediLsrAvilee  
d2p4va1  (  51 )    nkkrlreidrrvryLtkcmenlkivdysp
                    aaaaaaaaaaaaaaaaaaaaa bb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1grja1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1grja1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	GreA transcript cleavage protein, N-terminal domain	GreA transcript cleavage protein, N-terminal domain	Escherichia coli [TaxId: 562]	view
d2f23a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2f23a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	GreA transcript cleavage protein, N-terminal domain	GreA transcript cleavage protein, N-terminal domain	Thermus thermophilus [TaxId: 274]	view
d2p4va1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2p4va1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Escherichia coli [TaxId: 562]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	K	T	P	L	V	T	R	E	G	Y	E	K	L	K	Q	E	L	N	Y	L	W	R	E	E	R	P	E	V	T	K	K	V	T	W	A	A	S	L	G	D	R	S	E	N	A	D	Y	Q	Y	N	K	K	R	L	R	E	I	D	R	R	V	R	Y	L	T	K	C	M	E	N	L	K	I	V	D	Y	S	P

Member	Chain	UniProtKB	GO term
d1grja1	A	P0A6W5	GO:0001108
d1grja1	A	P0A6W5	GO:0003677
d1grja1	A	P0A6W5	GO:0005737
d1grja1	A	P0A6W5	GO:0005829
d1grja1	A	P0A6W5	GO:0006354
d1grja1	A	P0A6W5	GO:0032784
d1grja1	A	P0A6W5	GO:0070063
d1grja1	A	P0A6W5	GO:0001108
d1grja1	A	P0A6W5	GO:0003677
d1grja1	A	P0A6W5	GO:0005737
d1grja1	A	P0A6W5	GO:0005829
d1grja1	A	P0A6W5	GO:0006354
d1grja1	A	P0A6W5	GO:0032784
d1grja1	A	P0A6W5	GO:0070063
d1grja1	A	P0A6W5	GO:0001108
d1grja1	A	P0A6W5	GO:0003677
d1grja1	A	P0A6W5	GO:0005737
d1grja1	A	P0A6W5	GO:0005829
d1grja1	A	P0A6W5	GO:0006354
d1grja1	A	P0A6W5	GO:0032784
d1grja1	A	P0A6W5	GO:0070063
d2f23a1	A	Q72JT8	GO:0003677
d2f23a1	A	Q72JT8	GO:0006354
d2f23a1	A	Q72JT8	GO:0032784
d2f23a1	A	Q72JT8	GO:0070063
d2f23a1	A	Q72JT8	GO:0003677
d2f23a1	A	Q72JT8	GO:0006354
d2f23a1	A	Q72JT8	GO:0032784
d2f23a1	A	Q72JT8	GO:0070063
d2f23a1	A	Q72JT8	GO:0003677
d2f23a1	A	Q72JT8	GO:0006354
d2f23a1	A	Q72JT8	GO:0032784
d2f23a1	A	Q72JT8	GO:0070063

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