PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3rkoj-  (   1 )    mefafyicgliAilatlrvithtnpvhallyliiSllaiSgvffslGayf
d4he8j-  (   1 )    mslleglalfllllSgvlvvtlrnaihaalAlilnflvlAgvyvaldarf
                      aaaaaaaaaaaaaaaaaaa   aaaaaaaaaaaaaaaaaaaaa   aa

                             60        70        80        90        100 
d3rkoj-  (  51 )    aGaleiivyAgaiMvlfvfvvmmlnlggseieqerqwlkpqvwigpails
d4he8j-  (  51 )    lGfiqvivyAgaiVvlflfvimll-faaqgeig--fdplvrsrplaalla
                    aaaaaaa     aaaaaaaaaaa                   aaaaaaaa

                             110       120       130       140       150 
d3rkoj-  ( 101 )    aimlvvivyailgvndq-gidgtpisakavgitlfgpyvlavelasmlll
d4he8j-  (  98 )    lgvagilaaglwgldlaftqdlkgglpqalgpllygdwlfvllavgfllm
                    aaaaaaaaaaa               aaaaaaaa    aaaaaaaaaaaa

                             160       
d3rkoj-  ( 150 )    aglvvafhvgreeragevl
d4he8j-  ( 148 )    aatvvavalvepg      
                    aaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d3rkoj- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3rkoj- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	NADH-quinone oxidoreductase subunit J, NuoJ/Nqo10	Respiratory complex I subunit NuoJ-like	Escherichia coli [TaxId: 562]		view
d4he8j- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4he8j- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	NADH-quinone oxidoreductase subunit J, NuoJ/Nqo10	Respiratory complex I subunit NuoJ-like	Thermus thermophilus HB8 [TaxId: 300852]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	E	F	A	F	Y	I	C	G	L	I	A	I	L	A	T	L	R	V	I	T	H	T	N	P	V	H	A	L	L	Y	L	I	I	S	L	L	A	I	S	G	V	F	F	S	L	G	A	Y	F	A	G	A	L	E	I	I	V	Y	A	G	A	I	M	V	L	F	V	F	V	V	M	M	L	N	L	G	G	S	E	I	E	Q	E	R	Q	W	L	K	P	Q	V	W	I	G	P	A	I	L	S	A	I	M	L	V	V	I	V	Y	A	I	L	G	V	N	D	Q	-	G	I	D	G	T	P	I	S	A	K	A	V	G	I	T	L	F	G	P	Y	V	L	A	V	E	L	A	S	M	L	L	L	A	G	L	V	V	A	F	H	V	G	R	E	E	R	A	G	E	V	L
M	S	L	L	E	G	L	A	L	F	L	L	L	L	S	G	V	L	V	V	T	L	R	N	A	I	H	A	A	L	A	L	I	L	N	F	L	V	L	A	G	V	Y	V	A	L	D	A	R	F	L	G	F	I	Q	V	I	V	Y	A	G	A	I	V	V	L	F	L	F	V	I	M	L	L	-	F	A	A	Q	G	E	I	G	-	-	F	D	P	L	V	R	S	R	P	L	A	A	L	L	A	L	G	V	A	G	I	L	A	A	G	L	W	G	L	D	L	A	F	T	Q	D	L	K	G	G	L	P	Q	A	L	G	P	L	L	Y	G	D	W	L	F	V	L	L	A	V	G	F	L	L	M	A	A	T	V	V	A	V	A	L	V	E	P	G	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term

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M	E	F	A	F	Y	I	C	G	L	I	A	I	L	A	T	L	R	V	I	T	H	T	N	P	V	H	A	L	L	Y	L	I	I	S	L	L	A	I	S	G	V	F	F	S	L	G	A	Y	F	A	G	A	L	E	I	I	V	Y	A	G	A	I	M	V	L	F	V	F	V	V	M	M	L	N	L	G	G	S	E	I	E	Q	E	R	Q	W	L	K	P	Q	V	W	I	G	P	A	I	L	S	A	I	M	L	V	V	I	V	Y	A	I	L	G	V	N	D	Q	-	G	I	D	G	T	P	I	S	A	K	A	V	G	I	T	L	F	G	P	Y	V	L	A	V	E	L	A	S	M	L	L	L	A	G	L	V	V	A	F	H	V	G	R	E	E	R	A	G	E	V	L
M	S	L	L	E	G	L	A	L	F	L	L	L	L	S	G	V	L	V	V	T	L	R	N	A	I	H	A	A	L	A	L	I	L	N	F	L	V	L	A	G	V	Y	V	A	L	D	A	R	F	L	G	F	I	Q	V	I	V	Y	A	G	A	I	V	V	L	F	L	F	V	I	M	L	L	-	F	A	A	Q	G	E	I	G	-	-	F	D	P	L	V	R	S	R	P	L	A	A	L	L	A	L	G	V	A	G	I	L	A	A	G	L	W	G	L	D	L	A	F	T	Q	D	L	K	G	G	L	P	Q	A	L	G	P	L	L	Y	G	D	W	L	F	V	L	L	A	V	G	F	L	L	M	A	A	T	V	V	A	V	A	L	V	E	P	G	-	-	-	-	-	-

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M	E	F	A	F	Y	I	C	G	L	I	A	I	L	A	T	L	R	V	I	T	H	T	N	P	V	H	A	L	L	Y	L	I	I	S	L	L	A	I	S	G	V	F	F	S	L	G	A	Y	F	A	G	A	L	E	I	I	V	Y	A	G	A	I	M	V	L	F	V	F	V	V	M	M	L	N	L	G	G	S	E	I	E	Q	E	R	Q	W	L	K	P	Q	V	W	I	G	P	A	I	L	S	A	I	M	L	V	V	I	V	Y	A	I	L	G	V	N	D	Q	-	G	I	D	G	T	P	I	S	A	K	A	V	G	I	T	L	F	G	P	Y	V	L	A	V	E	L	A	S	M	L	L	L	A	G	L	V	V	A	F	H	V	G	R	E	E	R	A	G	E	V	L
M	S	L	L	E	G	L	A	L	F	L	L	L	L	S	G	V	L	V	V	T	L	R	N	A	I	H	A	A	L	A	L	I	L	N	F	L	V	L	A	G	V	Y	V	A	L	D	A	R	F	L	G	F	I	Q	V	I	V	Y	A	G	A	I	V	V	L	F	L	F	V	I	M	L	L	-	F	A	A	Q	G	E	I	G	-	-	F	D	P	L	V	R	S	R	P	L	A	A	L	L	A	L	G	V	A	G	I	L	A	A	G	L	W	G	L	D	L	A	F	T	Q	D	L	K	G	G	L	P	Q	A	L	G	P	L	L	Y	G	D	W	L	F	V	L	L	A	V	G	F	L	L	M	A	A	T	V	V	A	V	A	L	V	E	P	G	-	-	-	-	-	-

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M	E	F	A	F	Y	I	C	G	L	I	A	I	L	A	T	L	R	V	I	T	H	T	N	P	V	H	A	L	L	Y	L	I	I	S	L	L	A	I	S	G	V	F	F	S	L	G	A	Y	F	A	G	A	L	E	I	I	V	Y	A	G	A	I	M	V	L	F	V	F	V	V	M	M	L	N	L	G	G	S	E	I	E	Q	E	R	Q	W	L	K	P	Q	V	W	I	G	P	A	I	L	S	A	I	M	L	V	V	I	V	Y	A	I	L	G	V	N	D	Q	-	G	I	D	G	T	P	I	S	A	K	A	V	G	I	T	L	F	G	P	Y	V	L	A	V	E	L	A	S	M	L	L	L	A	G	L	V	V	A	F	H	V	G	R	E	E	R	A	G	E	V	L
M	S	L	L	E	G	L	A	L	F	L	L	L	L	S	G	V	L	V	V	T	L	R	N	A	I	H	A	A	L	A	L	I	L	N	F	L	V	L	A	G	V	Y	V	A	L	D	A	R	F	L	G	F	I	Q	V	I	V	Y	A	G	A	I	V	V	L	F	L	F	V	I	M	L	L	-	F	A	A	Q	G	E	I	G	-	-	F	D	P	L	V	R	S	R	P	L	A	A	L	L	A	L	G	V	A	G	I	L	A	A	G	L	W	G	L	D	L	A	F	T	Q	D	L	K	G	G	L	P	Q	A	L	G	P	L	L	Y	G	D	W	L	F	V	L	L	A	V	G	F	L	L	M	A	A	T	V	V	A	V	A	L	V	E	P	G	-	-	-	-	-	-