PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3rkog-  (   1 )    miplqhglilaailfvlGltglvirrnllfmliGleiminAsAlafvvag
d4he8k-  (   1 )        msylltSallfalGvygvltrrtailvflsielmlnAanlslvgfA
                         aaaaaaaaaaaaaaaaaaa   aaaaaaaaaaaaaaaaaaaaaaa

                             60        70        80        90        100 
d3rkog-  (  51 )    sywgqtdGqvmyilaislaaaeasiglalllqlhrrrqnlnidsvsemrg
d4he8k-  (  47 )    rayg-ldgqvaalmviavaaaevavglglivaiFrhrestavddlselrg
                    aa    aaaaaaaaaaaaaaaaaaaaaaaaaa         333

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d3rkog- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3rkog- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Respiratory complex I subunit NuoK-like	Escherichia coli [TaxId: 469008]		view
d4he8k- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4he8k- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	NADH-quinone oxidoreductase subunit K, NuoK/Nqo11	Respiratory complex I subunit NuoK-like	Thermus thermophilus HB8 [TaxId: 300852]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	I	P	L	Q	H	G	L	I	L	A	A	I	L	F	V	L	G	L	T	G	L	V	I	R	R	N	L	L	F	M	L	I	G	L	E	I	M	I	N	A	S	A	L	A	F	V	V	A	G	S	Y	W	G	Q	T	D	G	Q	V	M	Y	I	L	A	I	S	L	A	A	A	E	A	S	I	G	L	A	L	L	L	Q	L	H	R	R	R	Q	N	L	N	I	D	S	V	S	E	M	R	G
-	-	-	-	M	S	Y	L	L	T	S	A	L	L	F	A	L	G	V	Y	G	V	L	T	R	R	T	A	I	L	V	F	L	S	I	E	L	M	L	N	A	A	N	L	S	L	V	G	F	A	R	A	Y	G	-	L	D	G	Q	V	A	A	L	M	V	I	A	V	A	A	A	E	V	A	V	G	L	G	L	I	V	A	I	F	R	H	R	E	S	T	A	V	D	D	L	S	E	L	R	G

Member	Chain	UniProtKB	GO term

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M	I	P	L	Q	H	G	L	I	L	A	A	I	L	F	V	L	G	L	T	G	L	V	I	R	R	N	L	L	F	M	L	I	G	L	E	I	M	I	N	A	S	A	L	A	F	V	V	A	G	S	Y	W	G	Q	T	D	G	Q	V	M	Y	I	L	A	I	S	L	A	A	A	E	A	S	I	G	L	A	L	L	L	Q	L	H	R	R	R	Q	N	L	N	I	D	S	V	S	E	M	R	G
-	-	-	-	M	S	Y	L	L	T	S	A	L	L	F	A	L	G	V	Y	G	V	L	T	R	R	T	A	I	L	V	F	L	S	I	E	L	M	L	N	A	A	N	L	S	L	V	G	F	A	R	A	Y	G	-	L	D	G	Q	V	A	A	L	M	V	I	A	V	A	A	A	E	V	A	V	G	L	G	L	I	V	A	I	F	R	H	R	E	S	T	A	V	D	D	L	S	E	L	R	G

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M	I	P	L	Q	H	G	L	I	L	A	A	I	L	F	V	L	G	L	T	G	L	V	I	R	R	N	L	L	F	M	L	I	G	L	E	I	M	I	N	A	S	A	L	A	F	V	V	A	G	S	Y	W	G	Q	T	D	G	Q	V	M	Y	I	L	A	I	S	L	A	A	A	E	A	S	I	G	L	A	L	L	L	Q	L	H	R	R	R	Q	N	L	N	I	D	S	V	S	E	M	R	G
-	-	-	-	M	S	Y	L	L	T	S	A	L	L	F	A	L	G	V	Y	G	V	L	T	R	R	T	A	I	L	V	F	L	S	I	E	L	M	L	N	A	A	N	L	S	L	V	G	F	A	R	A	Y	G	-	L	D	G	Q	V	A	A	L	M	V	I	A	V	A	A	A	E	V	A	V	G	L	G	L	I	V	A	I	F	R	H	R	E	S	T	A	V	D	D	L	S	E	L	R	G

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M	I	P	L	Q	H	G	L	I	L	A	A	I	L	F	V	L	G	L	T	G	L	V	I	R	R	N	L	L	F	M	L	I	G	L	E	I	M	I	N	A	S	A	L	A	F	V	V	A	G	S	Y	W	G	Q	T	D	G	Q	V	M	Y	I	L	A	I	S	L	A	A	A	E	A	S	I	G	L	A	L	L	L	Q	L	H	R	R	R	Q	N	L	N	I	D	S	V	S	E	M	R	G
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