PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d4o5ja-  (  29 )      lnekyeqlsqylnqvaslkqsiqnAnnielVnssLnyLksFTnnNyns
d4zh7a1  (  27 )    qdlsdrYesLnnlLnrYstlntlIklSadpsaInavRenLgaSaknLigd
                       aaaaaaaaaaaaaaaaaaaaaaaa  aaaaaaaaaaaaaaaaaaaa 

                             60        70        80        90        100 
d4o5ja-  (  77 )    ttqSPIFnAVqAVITSVLGFwsLYAgnYFTFFVGkkv-----sGqpAsvq
d4zh7a1  (  77 )    kanSPAyQAVlLAINAAVGFWNVVG---yVTqÇGGnangqkSissktifn
                        aaaaaaaaaaaaaaaaaaaa                          

                             110       120       130       140       150 
d4o5ja-  ( 124 )    gnPpfkTiienÇsg-----------ienÇaMdqttYdkMkklAedLqaAQ
d4zh7a1  ( 124 )    nEPGy----rstsItÇslnghsPgy--ygPMsienFkkLneAYqiLQtaL
                                                    aaaaaaaaaaaaaaaaaa

                             160       170       180       190       200 
d4o5ja-  ( 163 )    tnsatgnnLÇaLsgçaatnppnstVsnALnlAqqLMdlIantkTAMMWkN
d4zh7a1  ( 168 )    kr-----gLpALke---------saqalLaqAstLIntInnaÇPyFhafs
                                            aaaaaaaaaaaaaaaaa    bb   

                             210       220       230       240       250 
d4o5ja-  ( 218 )    IvIsgvsntsgaitstnyPtqy-aVFnnIkaMIpiLqqAVtlSqsNhtls
d4zh7a1  ( 295 )    ------------tttgkIçgaFseeIsaIqkMItdAqeLvnqtsvInehe
                                   bb      aaaaaaaaaaaaaaaaaaaaaaaaa  

                             260       270       280       290       300 
d4o5ja-  ( 267 )    asLqaqa-------tgqtnpkFakdIytFAqnQkqVisyAqdIfnlFn--
d4zh7a1  ( 333 )    Qt-tpVgnnngkpFnPftdAsfAqgMlaNAsAQakMlnlAeqVgqaInpe
                                          aaaaaaaaaaaaaaaaaaaaaaaaa   

                             310       320       330       340       350 
d4o5ja-  ( 309 )    sIp---aeqyk-YLekAylKiPnags----tptnpyrqVvnLnqeVqtIk
d4zh7a1  ( 382 )    rlsgtfqnFVkgfLat-çnNpsqgsapGtVttqTfaSGÇAyVgqTitnLk
                          aaaaa                              aaaaaaaaa

                             360       370       380       390       400 
d4o5ja-  ( 351 )    nnvsy---ygnrVdaAlsvArdVynlksnqaeivtAyndAktlseeiskl
d4zh7a1  ( 438 )    nsiahFgtqeqqIqqAenIAdTLvnFksryseLgntynsIttaLsnIpna
                    aaaaa   aaaaaaaaaaaaaaaa aaaaaaaaaaaaaaaaaaaa     

                             410       420       430       440 
d4o5ja-  ( 398 )    p--------------------------------------h
d4zh7a1  ( 488 )    qsLqnAVskknnpyspqgidtnyylnqnSynqIqtinqel

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d4o5ja- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4o5ja- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Sialic acid-binding adhesin SabA	Extracellular adhesion domain of SabA	Helicobacter pylori [TaxId: 210]		view
d4zh7a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4zh7a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Blood group antibody binding adhesin BabA	Extracellular adhesion domain of SabA	Helicobacter pylori [TaxId: 210]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term

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Q	D	L	S	D	R	Y	E	S	L	N	N	L	L	N	R	Y	S	T	L	N	T	L	I	K	L	S	A	D	P	S	A	I	N	A	V	R	E	N	L	G	A	S	A	K	N	L	I	G	D	K	A	N	S	P	A	Y	Q	A	V	L	L	A	I	N	A	A	V	G	F	W	N	V	V	G	-	-	-	Y	V	T	Q	C	G	G	N	A	N	G	Q	K	S	I	S	S	K	T	I	F	N	N	E	P	G	Y	-	-	-	-	R	S	T	S	I	T	C	S	L	N	G	H	S	P	G	Y	-	-	Y	G	P	M	S	I	E	N	F	K	K	L	N	E	A	Y	Q	I	L	Q	T	A	L	K	R	-	-	-	-	-	G	L	P	A	L	K	E	-	-	-	-	-	-	-	-	-	S	A	Q	A	L	L	A	Q	A	S	T	L	I	N	T	I	N	N	A	C	P	Y	F	H	A	F	S	-	-	-	-	-	-	-	-	-	-	-	-	T	T	T	G	K	I	C	G	A	F	S	E	E	I	S	A	I	Q	K	M	I	T	D	A	Q	E	L	V	N	Q	T	S	V	I	N	E	H	E	Q	T	-	T	P	V	G	N	N	N	G	K	P	F	N	P	F	T	D	A	S	F	A	Q	G	M	L	A	N	A	S	A	Q	A	K	M	L	N	L	A	E	Q	V	G	Q	A	I	N	P	E	R	L	S	G	T	F	Q	N	F	V	K	G	F	L	A	T	-	C	N	N	P	S	Q	G	S	A	P	G	T	V	T	T	Q	T	F	A	S	G	C	A	Y	V	G	Q	T	I	T	N	L	K	N	S	I	A	H	F	G	T	Q	E	Q	Q	I	Q	Q	A	E	N	I	A	D	T	L	V	N	F	K	S	R	Y	S	E	L	G	N	T	Y	N	S	I	T	T	A	L	S	N	I	P	N	A	Q	S	L	Q	N	A	V	S	K	K	N	N	P	Y	S	P	Q	G	I	D	T	N	Y	Y	L	N	Q	N	S	Y	N	Q	I	Q	T	I	N	Q	E	L

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