PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d4wd8a-  (  22 )                    siifrlllNvlmSiiAiisyqwyg-------ihl
d6vx8a-  (  15 )    ggfskllllwrgsiyklLwrellcflglFmalsaaYrfvlteeqkryfEk
                                      aaaaaaaaaaaaaaaaa               

                             60        70        80        90        100 
d4wd8a-  (  53 )    tvapfsl--lgiaIaifLgfRNsaSysrfveArnlWgtVliAErtLVrqL
d6vx8a-  (  65 )    lVlycdryAslipvsfvLgfYvtlVvhrwwnQylsM--Pl--TdaLmcvV
                     aaaa     aaaaaaaaaaaaaaaaaaaaaaaa         aaaaaaa

                             110       120       130       140       150 
d4wd8a-  ( 101 )    rnilp----aehdAHrrIVsYLVAFSwSLkhqLrk------tdptadLrr
d6vx8a-  ( 111 )    vgtVhghderGrlYRrtLMryAgLSgVLILrsVStaVfkrFptidhVvea
                    aaa        aaaaaaaaaaaaaaaaaaaaaa           aaaaa 

                             160       170       180       190       200 
d4wd8a-  ( 141 )    -lLpeerVteIla--ss-mpTnrIllLAgneIgqlreagkL-sdityglM
d6vx8a-  ( 161 )    gFMtreerkkfenlnssynkywVPCvwFcnlAaqArregrIrdngafklL
                        aaaaaaaa          aaaaaaaaaaaaaaa      aaaaaaa

                             210       220       230       240       250 
d4wd8a-  ( 186 )    dnkldeLahVlgGCerlattpvpfaytliLqrtVylFCtlLPfAlVgdl-
d6vx8a-  ( 211 )    leeLnvFrskCgmLfhydwisVplvytqvVtiaVysYFlaCliGrQfLdp
                    aaaaaaaaaaaaaaaaaaa    aaaaaaaaaaaaaaaaaaaaa      

                             260       270       280       290       300 
d4wd8a-  ( 235 )    ---------hymTpfvSvfiSytfLswDslAeeledPFgtaanDLpLnam
d6vx8a-  ( 261 )    aqgykdhdldlcvPiftllqFffYAGwLkvAeqlinPFgedddDfeTnfl
                                  aaaaaaaaaaaaaaaaaaa             aaaa

                             310       320      
d4wd8a-  ( 276 )    CntIernLldmtgq              
d6vx8a-  ( 311 )    IdrcfqvSmlaVdemYddlamlekdlyw
                    aaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d4wd8a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4wd8a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Klebsiella pneumoniae Bestropin homolog KpBest	Bestropin channel-like	Klebsiella pneumoniae UHKPC96 [TaxId: 1284795]		view
d6vx8a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6vx8a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Bestropin channel-like	Cow (Bos taurus) [TaxId: 9913]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term

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G	G	F	S	K	L	L	L	L	W	R	G	S	I	Y	K	L	L	W	R	E	L	L	C	F	L	G	L	F	M	A	L	S	A	A	Y	R	F	V	L	T	E	E	Q	K	R	Y	F	E	K	L	V	L	Y	C	D	R	Y	A	S	L	I	P	V	S	F	V	L	G	F	Y	V	T	L	V	V	H	R	W	W	N	Q	Y	L	S	M	-	-	P	L	-	-	T	D	A	L	M	C	V	V	V	G	T	V	H	G	H	D	E	R	G	R	L	Y	R	R	T	L	M	R	Y	A	G	L	S	G	V	L	I	L	R	S	V	S	T	A	V	F	K	R	F	P	T	I	D	H	V	V	E	A	G	F	M	T	R	E	E	R	K	K	F	E	N	L	N	S	S	Y	N	K	Y	W	V	P	C	V	W	F	C	N	L	A	A	Q	A	R	R	E	G	R	I	R	D	N	G	A	F	K	L	L	L	E	E	L	N	V	F	R	S	K	C	G	M	L	F	H	Y	D	W	I	S	V	P	L	V	Y	T	Q	V	V	T	I	A	V	Y	S	Y	F	L	A	C	L	I	G	R	Q	F	L	D	P	A	Q	G	Y	K	D	H	D	L	D	L	C	V	P	I	F	T	L	L	Q	F	F	F	Y	A	G	W	L	K	V	A	E	Q	L	I	N	P	F	G	E	D	D	D	D	F	E	T	N	F	L	I	D	R	C	F	Q	V	S	M	L	A	V	D	E	M	Y	D	D	L	A	M	L	E	K	D	L	Y	W

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G	G	F	S	K	L	L	L	L	W	R	G	S	I	Y	K	L	L	W	R	E	L	L	C	F	L	G	L	F	M	A	L	S	A	A	Y	R	F	V	L	T	E	E	Q	K	R	Y	F	E	K	L	V	L	Y	C	D	R	Y	A	S	L	I	P	V	S	F	V	L	G	F	Y	V	T	L	V	V	H	R	W	W	N	Q	Y	L	S	M	-	-	P	L	-	-	T	D	A	L	M	C	V	V	V	G	T	V	H	G	H	D	E	R	G	R	L	Y	R	R	T	L	M	R	Y	A	G	L	S	G	V	L	I	L	R	S	V	S	T	A	V	F	K	R	F	P	T	I	D	H	V	V	E	A	G	F	M	T	R	E	E	R	K	K	F	E	N	L	N	S	S	Y	N	K	Y	W	V	P	C	V	W	F	C	N	L	A	A	Q	A	R	R	E	G	R	I	R	D	N	G	A	F	K	L	L	L	E	E	L	N	V	F	R	S	K	C	G	M	L	F	H	Y	D	W	I	S	V	P	L	V	Y	T	Q	V	V	T	I	A	V	Y	S	Y	F	L	A	C	L	I	G	R	Q	F	L	D	P	A	Q	G	Y	K	D	H	D	L	D	L	C	V	P	I	F	T	L	L	Q	F	F	F	Y	A	G	W	L	K	V	A	E	Q	L	I	N	P	F	G	E	D	D	D	D	F	E	T	N	F	L	I	D	R	C	F	Q	V	S	M	L	A	V	D	E	M	Y	D	D	L	A	M	L	E	K	D	L	Y	W

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