PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d4adya2  (   4 )    ttAaplLalLrenqdsvktyAlesInnvVdq----------lwseIsnel
d4cr2z2  (  49 )    le--llverLkeddsslYeaSLnaLkesiknstssmtavpkplkfLrpTy
                         aaaa     aaaaaaaaaaaaa              aaaaa   a

                             60        70        80        90        100 
d4adya2  (  44 )    pdIealydddtF-sdr-eAAlIASkVyynlge--yesAvkYAlaAkdrFd
d4cr2z2  (  97 )    pdLcsiYdkwtDpnLkssLADVLSIlamtysenGkhdSLryRLls-dvsd
                    aaaaaaa            aaaaaaaaaaa       aaaaaa       

                             110       120       130       140       150 
d4adya2  (  91 )    ides--qfvetIvskSie-YvqeAsqYt---------deqFytd-----i
d4cr2z2  ( 146 )    fegwgheyIrhlAlEIgevYndqVekdaedetssdgsksdgsaaTsgfef
                           aaaaaaaaaa   aaaa                          

                             160       170       180       190       200 
d4adya2  ( 129 )    idpkltsIFerI-ekclkasel-lALgiALeGyRldiIesAlkskldsts
d4cr2z2  ( 196 )    SkedTlrlcldIVpyfLkhngeedAVdlLleieSidkLpqFVdent----
                      aaaaaaaa   aaaaaa     aaaaaaa     aaaaa         

                             210       220       230       240       250 
d4adya2  ( 181 )    envkiinyLLtlAittv--tnskFrssILrkSfdfLnpncdYlTLnkVVv
d4cr2z2  ( 242 )    -fqrvCqyMvacvpllpppedvaflktAysIYlsqn----eLtdAIalAv
                     aaaaaaaaaaaaaa       aaaaaaaaaaaa       aaaaaaaaa

                             260       270       280       290       300 
d4adya2  ( 231 )    nlndaglAlqLFkkLkeendglsaqIAfdLVssAsqqLle--iLvteLta
d4cr2z2  ( 287 )    rlgeedmIrsVFdats--dpvmHkqLAyiLaaq--ktsFeyegVqdiIgn
                    aa  aaaaaaaaaa       aaaaaaaaaaa    aaaa      aaaa

                             310       320       330   
d4adya2  ( 280 )    q------gYdpallniLsglptcdyyntfllnnkn
d4cr2z2  ( 333 )    gklsehflYlakElnLTgpkvpediykshldnsks
                              aaaaaa    aaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d4adya2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4adya2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Proteasome regulatory subunit Rpn2, N-terminal domain	Proteasome regulatory subunit Rpn2, N-terminal domain-like	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]		view
d4cr2z2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4cr2z2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Proteasome regulatory subunit Rpn1, N-terminal domain	Proteasome regulatory subunit Rpn2, N-terminal domain-like	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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T	T	A	A	P	L	L	A	L	L	R	E	N	Q	D	S	V	K	T	Y	A	L	E	S	I	N	N	V	V	D	Q	-	-	-	-	-	-	-	-	-	-	L	W	S	E	I	S	N	E	L	P	D	I	E	A	L	Y	D	D	D	T	F	-	S	D	R	-	E	A	A	L	I	A	S	K	V	Y	Y	N	L	G	E	-	-	Y	E	S	A	V	K	Y	A	L	A	A	K	D	R	F	D	I	D	E	S	-	-	Q	F	V	E	T	I	V	S	K	S	I	E	-	Y	V	Q	E	A	S	Q	Y	T	-	-	-	-	-	-	-	-	-	D	E	Q	F	Y	T	D	-	-	-	-	-	I	I	D	P	K	L	T	S	I	F	E	R	I	-	E	K	C	L	K	A	S	E	L	-	L	A	L	G	I	A	L	E	G	Y	R	L	D	I	I	E	S	A	L	K	S	K	L	D	S	T	S	E	N	V	K	I	I	N	Y	L	L	T	L	A	I	T	T	V	-	-	T	N	S	K	F	R	S	S	I	L	R	K	S	F	D	F	L	N	P	N	C	D	Y	L	T	L	N	K	V	V	V	N	L	N	D	A	G	L	A	L	Q	L	F	K	K	L	K	E	E	N	D	G	L	S	A	Q	I	A	F	D	L	V	S	S	A	S	Q	Q	L	L	E	-	-	I	L	V	T	E	L	T	A	Q	-	-	-	-	-	-	G	Y	D	P	A	L	L	N	I	L	S	G	L	P	T	C	D	Y	Y	N	T	F	L	L	N	N	K	N
L	E	-	-	L	L	V	E	R	L	K	E	D	D	S	S	L	Y	E	A	S	L	N	A	L	K	E	S	I	K	N	S	T	S	S	M	T	A	V	P	K	P	L	K	F	L	R	P	T	Y	P	D	L	C	S	I	Y	D	K	W	T	D	P	N	L	K	S	S	L	A	D	V	L	S	I	L	A	M	T	Y	S	E	N	G	K	H	D	S	L	R	Y	R	L	L	S	-	D	V	S	D	F	E	G	W	G	H	E	Y	I	R	H	L	A	L	E	I	G	E	V	Y	N	D	Q	V	E	K	D	A	E	D	E	T	S	S	D	G	S	K	S	D	G	S	A	A	T	S	G	F	E	F	S	K	E	D	T	L	R	L	C	L	D	I	V	P	Y	F	L	K	H	N	G	E	E	D	A	V	D	L	L	L	E	I	E	S	I	D	K	L	P	Q	F	V	D	E	N	T	-	-	-	-	-	F	Q	R	V	C	Q	Y	M	V	A	C	V	P	L	L	P	P	P	E	D	V	A	F	L	K	T	A	Y	S	I	Y	L	S	Q	N	-	-	-	-	E	L	T	D	A	I	A	L	A	V	R	L	G	E	E	D	M	I	R	S	V	F	D	A	T	S	-	-	D	P	V	M	H	K	Q	L	A	Y	I	L	A	A	Q	-	-	K	T	S	F	E	Y	E	G	V	Q	D	I	I	G	N	G	K	L	S	E	H	F	L	Y	L	A	K	E	L	N	L	T	G	P	K	V	P	E	D	I	Y	K	S	H	L	D	N	S	K	S

Member	Chain	UniProtKB	GO term

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T	T	A	A	P	L	L	A	L	L	R	E	N	Q	D	S	V	K	T	Y	A	L	E	S	I	N	N	V	V	D	Q	-	-	-	-	-	-	-	-	-	-	L	W	S	E	I	S	N	E	L	P	D	I	E	A	L	Y	D	D	D	T	F	-	S	D	R	-	E	A	A	L	I	A	S	K	V	Y	Y	N	L	G	E	-	-	Y	E	S	A	V	K	Y	A	L	A	A	K	D	R	F	D	I	D	E	S	-	-	Q	F	V	E	T	I	V	S	K	S	I	E	-	Y	V	Q	E	A	S	Q	Y	T	-	-	-	-	-	-	-	-	-	D	E	Q	F	Y	T	D	-	-	-	-	-	I	I	D	P	K	L	T	S	I	F	E	R	I	-	E	K	C	L	K	A	S	E	L	-	L	A	L	G	I	A	L	E	G	Y	R	L	D	I	I	E	S	A	L	K	S	K	L	D	S	T	S	E	N	V	K	I	I	N	Y	L	L	T	L	A	I	T	T	V	-	-	T	N	S	K	F	R	S	S	I	L	R	K	S	F	D	F	L	N	P	N	C	D	Y	L	T	L	N	K	V	V	V	N	L	N	D	A	G	L	A	L	Q	L	F	K	K	L	K	E	E	N	D	G	L	S	A	Q	I	A	F	D	L	V	S	S	A	S	Q	Q	L	L	E	-	-	I	L	V	T	E	L	T	A	Q	-	-	-	-	-	-	G	Y	D	P	A	L	L	N	I	L	S	G	L	P	T	C	D	Y	Y	N	T	F	L	L	N	N	K	N
L	E	-	-	L	L	V	E	R	L	K	E	D	D	S	S	L	Y	E	A	S	L	N	A	L	K	E	S	I	K	N	S	T	S	S	M	T	A	V	P	K	P	L	K	F	L	R	P	T	Y	P	D	L	C	S	I	Y	D	K	W	T	D	P	N	L	K	S	S	L	A	D	V	L	S	I	L	A	M	T	Y	S	E	N	G	K	H	D	S	L	R	Y	R	L	L	S	-	D	V	S	D	F	E	G	W	G	H	E	Y	I	R	H	L	A	L	E	I	G	E	V	Y	N	D	Q	V	E	K	D	A	E	D	E	T	S	S	D	G	S	K	S	D	G	S	A	A	T	S	G	F	E	F	S	K	E	D	T	L	R	L	C	L	D	I	V	P	Y	F	L	K	H	N	G	E	E	D	A	V	D	L	L	L	E	I	E	S	I	D	K	L	P	Q	F	V	D	E	N	T	-	-	-	-	-	F	Q	R	V	C	Q	Y	M	V	A	C	V	P	L	L	P	P	P	E	D	V	A	F	L	K	T	A	Y	S	I	Y	L	S	Q	N	-	-	-	-	E	L	T	D	A	I	A	L	A	V	R	L	G	E	E	D	M	I	R	S	V	F	D	A	T	S	-	-	D	P	V	M	H	K	Q	L	A	Y	I	L	A	A	Q	-	-	K	T	S	F	E	Y	E	G	V	Q	D	I	I	G	N	G	K	L	S	E	H	F	L	Y	L	A	K	E	L	N	L	T	G	P	K	V	P	E	D	I	Y	K	S	H	L	D	N	S	K	S

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T	T	A	A	P	L	L	A	L	L	R	E	N	Q	D	S	V	K	T	Y	A	L	E	S	I	N	N	V	V	D	Q	-	-	-	-	-	-	-	-	-	-	L	W	S	E	I	S	N	E	L	P	D	I	E	A	L	Y	D	D	D	T	F	-	S	D	R	-	E	A	A	L	I	A	S	K	V	Y	Y	N	L	G	E	-	-	Y	E	S	A	V	K	Y	A	L	A	A	K	D	R	F	D	I	D	E	S	-	-	Q	F	V	E	T	I	V	S	K	S	I	E	-	Y	V	Q	E	A	S	Q	Y	T	-	-	-	-	-	-	-	-	-	D	E	Q	F	Y	T	D	-	-	-	-	-	I	I	D	P	K	L	T	S	I	F	E	R	I	-	E	K	C	L	K	A	S	E	L	-	L	A	L	G	I	A	L	E	G	Y	R	L	D	I	I	E	S	A	L	K	S	K	L	D	S	T	S	E	N	V	K	I	I	N	Y	L	L	T	L	A	I	T	T	V	-	-	T	N	S	K	F	R	S	S	I	L	R	K	S	F	D	F	L	N	P	N	C	D	Y	L	T	L	N	K	V	V	V	N	L	N	D	A	G	L	A	L	Q	L	F	K	K	L	K	E	E	N	D	G	L	S	A	Q	I	A	F	D	L	V	S	S	A	S	Q	Q	L	L	E	-	-	I	L	V	T	E	L	T	A	Q	-	-	-	-	-	-	G	Y	D	P	A	L	L	N	I	L	S	G	L	P	T	C	D	Y	Y	N	T	F	L	L	N	N	K	N
L	E	-	-	L	L	V	E	R	L	K	E	D	D	S	S	L	Y	E	A	S	L	N	A	L	K	E	S	I	K	N	S	T	S	S	M	T	A	V	P	K	P	L	K	F	L	R	P	T	Y	P	D	L	C	S	I	Y	D	K	W	T	D	P	N	L	K	S	S	L	A	D	V	L	S	I	L	A	M	T	Y	S	E	N	G	K	H	D	S	L	R	Y	R	L	L	S	-	D	V	S	D	F	E	G	W	G	H	E	Y	I	R	H	L	A	L	E	I	G	E	V	Y	N	D	Q	V	E	K	D	A	E	D	E	T	S	S	D	G	S	K	S	D	G	S	A	A	T	S	G	F	E	F	S	K	E	D	T	L	R	L	C	L	D	I	V	P	Y	F	L	K	H	N	G	E	E	D	A	V	D	L	L	L	E	I	E	S	I	D	K	L	P	Q	F	V	D	E	N	T	-	-	-	-	-	F	Q	R	V	C	Q	Y	M	V	A	C	V	P	L	L	P	P	P	E	D	V	A	F	L	K	T	A	Y	S	I	Y	L	S	Q	N	-	-	-	-	E	L	T	D	A	I	A	L	A	V	R	L	G	E	E	D	M	I	R	S	V	F	D	A	T	S	-	-	D	P	V	M	H	K	Q	L	A	Y	I	L	A	A	Q	-	-	K	T	S	F	E	Y	E	G	V	Q	D	I	I	G	N	G	K	L	S	E	H	F	L	Y	L	A	K	E	L	N	L	T	G	P	K	V	P	E	D	I	Y	K	S	H	L	D	N	S	K	S

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T	T	A	A	P	L	L	A	L	L	R	E	N	Q	D	S	V	K	T	Y	A	L	E	S	I	N	N	V	V	D	Q	-	-	-	-	-	-	-	-	-	-	L	W	S	E	I	S	N	E	L	P	D	I	E	A	L	Y	D	D	D	T	F	-	S	D	R	-	E	A	A	L	I	A	S	K	V	Y	Y	N	L	G	E	-	-	Y	E	S	A	V	K	Y	A	L	A	A	K	D	R	F	D	I	D	E	S	-	-	Q	F	V	E	T	I	V	S	K	S	I	E	-	Y	V	Q	E	A	S	Q	Y	T	-	-	-	-	-	-	-	-	-	D	E	Q	F	Y	T	D	-	-	-	-	-	I	I	D	P	K	L	T	S	I	F	E	R	I	-	E	K	C	L	K	A	S	E	L	-	L	A	L	G	I	A	L	E	G	Y	R	L	D	I	I	E	S	A	L	K	S	K	L	D	S	T	S	E	N	V	K	I	I	N	Y	L	L	T	L	A	I	T	T	V	-	-	T	N	S	K	F	R	S	S	I	L	R	K	S	F	D	F	L	N	P	N	C	D	Y	L	T	L	N	K	V	V	V	N	L	N	D	A	G	L	A	L	Q	L	F	K	K	L	K	E	E	N	D	G	L	S	A	Q	I	A	F	D	L	V	S	S	A	S	Q	Q	L	L	E	-	-	I	L	V	T	E	L	T	A	Q	-	-	-	-	-	-	G	Y	D	P	A	L	L	N	I	L	S	G	L	P	T	C	D	Y	Y	N	T	F	L	L	N	N	K	N
L	E	-	-	L	L	V	E	R	L	K	E	D	D	S	S	L	Y	E	A	S	L	N	A	L	K	E	S	I	K	N	S	T	S	S	M	T	A	V	P	K	P	L	K	F	L	R	P	T	Y	P	D	L	C	S	I	Y	D	K	W	T	D	P	N	L	K	S	S	L	A	D	V	L	S	I	L	A	M	T	Y	S	E	N	G	K	H	D	S	L	R	Y	R	L	L	S	-	D	V	S	D	F	E	G	W	G	H	E	Y	I	R	H	L	A	L	E	I	G	E	V	Y	N	D	Q	V	E	K	D	A	E	D	E	T	S	S	D	G	S	K	S	D	G	S	A	A	T	S	G	F	E	F	S	K	E	D	T	L	R	L	C	L	D	I	V	P	Y	F	L	K	H	N	G	E	E	D	A	V	D	L	L	L	E	I	E	S	I	D	K	L	P	Q	F	V	D	E	N	T	-	-	-	-	-	F	Q	R	V	C	Q	Y	M	V	A	C	V	P	L	L	P	P	P	E	D	V	A	F	L	K	T	A	Y	S	I	Y	L	S	Q	N	-	-	-	-	E	L	T	D	A	I	A	L	A	V	R	L	G	E	E	D	M	I	R	S	V	F	D	A	T	S	-	-	D	P	V	M	H	K	Q	L	A	Y	I	L	A	A	Q	-	-	K	T	S	F	E	Y	E	G	V	Q	D	I	I	G	N	G	K	L	S	E	H	F	L	Y	L	A	K	E	L	N	L	T	G	P	K	V	P	E	D	I	Y	K	S	H	L	D	N	S	K	S