PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2h8aa1  (   9 )         nevlMaftSyatiilakmmflssata-------------fqrltn
d2q7ra1  (   2 )    dqetvgnvvlLaiVtliSvvqngfFahkveheSrtqn-grsfq-------
d2uuia1  (   2 )     k---devalLaaVtllGvllqayFslqvisarrafrVspp---------
d4al0a-  (   7 )     vmsspALpaFllCstlLvikMyvVaiitgqvrlrkkAFanpedAlrhgg
                            aaaaaaaaaaaaaaaaaaaaaaaaaaa               

                             60        70        80        90        100 
d2h8aa1  (  41 )    kvflrtdekvervrrahlnDlenivpFlgigllyslsgpdlstAlihfri
d2q7ra1  (  44 )    ---rtgtlaferVytAnqnCvdayptFlavLwsAGllc-sqvpAafaGl-
d2uuia1  (  39 )    --lttgppeFervyrAqvnCseyfplFlatLwvAGiff-hegaAalcGlv
d4al0a-  (  56 )    pqycrsdpdVerClrAhrnDmeTIypFlflGfvYSflgpnpfvAwmhFlv
                           aaaaaaaaaaaaaaaaaaaaaaaaaaaa     aaaaaaaaaa

                             110       120       130       140       150 
d2h8aa1  ( 109 )    FvgariyHtiayltplp--qpNrglaffvgygvtlsmayrl         
d2q7ra1  (  90 )    YLfvRqkyFvgylgertqstpgyiFgkriilfLfl-svagifnyylifff
d2uuia1  (  86 )    YLfARlrYFqgyarsaqlrlaplyaSaralwlLvalaalGllahflpaal
d4al0a-  ( 106 )    FlvGRvaHtvAylgklr-----apirsvtytlAqlpcasMalqilweaar
                    aaaaaaaaaaaaa           aaaaaaaaaaaaaaaaaaaaaaaaa 

                             160 
d2h8aa1                       
d2q7ra1                       
d2uuia1  ( 136 )    raallgrlrt
d4al0a-  ( 151 )    hl

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2h8aa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2h8aa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Microsomal glutathione S-transferase 1	MAPEG domain	Norway rat (Rattus norvegicus) [TaxId: 10116]	view
d2q7ra1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2q7ra1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Arachidonate 5-lipoxygenase-activating protein, FLAP	MAPEG domain	Human (Homo sapiens) [TaxId: 9606]	view
d2uuia1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2uuia1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Leukotriene C4 synthase	MAPEG domain	Human (Homo sapiens) [TaxId: 9606]	view
d4al0a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4al0a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d2h8aa1	A	P08011	GO:0004364
d2h8aa1	A	P08011	GO:0004602
d2h8aa1	A	P08011	GO:0005739
d2h8aa1	A	P08011	GO:0005741
d2h8aa1	A	P08011	GO:0005778
d2h8aa1	A	P08011	GO:0005783
d2h8aa1	A	P08011	GO:0005789
d2h8aa1	A	P08011	GO:0006749
d2h8aa1	A	P08011	GO:0009410
d2h8aa1	A	P08011	GO:0016020
d2h8aa1	A	P08011	GO:0016740
d2h8aa1	A	P08011	GO:0032496
d2h8aa1	A	P08011	GO:0033327
d2h8aa1	A	P08011	GO:0034635
d2h8aa1	A	P08011	GO:0042802
d2h8aa1	A	P08011	GO:0043295
d2h8aa1	A	P08011	GO:0045177
d2h8aa1	A	P08011	GO:0071449
d2h8aa1	A	P08011	GO:0098869
d2q7ra1	A	P20292	GO:0002540
d2q7ra1	A	P20292	GO:0002675
d2q7ra1	A	P20292	GO:0004051
d2q7ra1	A	P20292	GO:0004364
d2q7ra1	A	P20292	GO:0004464
d2q7ra1	A	P20292	GO:0004602
d2q7ra1	A	P20292	GO:0005515
d2q7ra1	A	P20292	GO:0005634
d2q7ra1	A	P20292	GO:0005635
d2q7ra1	A	P20292	GO:0005783
d2q7ra1	A	P20292	GO:0005789
d2q7ra1	A	P20292	GO:0006691
d2q7ra1	A	P20292	GO:0008047
d2q7ra1	A	P20292	GO:0016020
d2q7ra1	A	P20292	GO:0019370
d2q7ra1	A	P20292	GO:0019372
d2q7ra1	A	P20292	GO:0019899
d2q7ra1	A	P20292	GO:0031965
d2q7ra1	A	P20292	GO:0042802
d2q7ra1	A	P20292	GO:0044877
d2q7ra1	A	P20292	GO:0050544
d2q7ra1	A	P20292	GO:0070207
d2q7ra1	A	P20292	GO:0071277
d2q7ra1	A	P20292	GO:0098869
d2uuia1	A	Q16873	GO:0004364
d2uuia1	A	Q16873	GO:0004464
d2uuia1	A	Q16873	GO:0004602
d2uuia1	A	Q16873	GO:0005515
d2uuia1	A	Q16873	GO:0005634
d2uuia1	A	Q16873	GO:0005635
d2uuia1	A	Q16873	GO:0005640
d2uuia1	A	Q16873	GO:0005783
d2uuia1	A	Q16873	GO:0005789
d2uuia1	A	Q16873	GO:0006629
d2uuia1	A	Q16873	GO:0006691
d2uuia1	A	Q16873	GO:0008047
d2uuia1	A	Q16873	GO:0008289
d2uuia1	A	Q16873	GO:0016020
d2uuia1	A	Q16873	GO:0016740
d2uuia1	A	Q16873	GO:0016829
d2uuia1	A	Q16873	GO:0019370
d2uuia1	A	Q16873	GO:0031965
d2uuia1	A	Q16873	GO:0042759
d2uuia1	A	Q16873	GO:0042802
d2uuia1	A	Q16873	GO:0043231
d2uuia1	A	Q16873	GO:0098869

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-	-	-	-	-	N	E	V	L	M	A	F	T	S	Y	A	T	I	I	L	A	K	M	M	F	L	S	S	A	T	A	-	-	-	-	-	-	-	-	-	-	-	-	-	F	Q	R	L	T	N	K	V	F	L	R	T	D	E	K	V	E	R	V	R	R	A	H	L	N	D	L	E	N	I	V	P	F	L	G	I	G	L	L	Y	S	L	S	G	P	D	L	S	T	A	L	I	H	F	R	I	F	V	G	A	R	I	Y	H	T	I	A	Y	L	T	P	L	P	-	-	Q	P	N	R	G	L	A	F	F	V	G	Y	G	V	T	L	S	M	A	Y	R	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
D	Q	E	T	V	G	N	V	V	L	L	A	I	V	T	L	I	S	V	V	Q	N	G	F	F	A	H	K	V	E	H	E	S	R	T	Q	N	-	G	R	S	F	Q	-	-	-	-	-	-	-	-	-	-	R	T	G	T	L	A	F	E	R	V	Y	T	A	N	Q	N	C	V	D	A	Y	P	T	F	L	A	V	L	W	S	A	G	L	L	C	-	S	Q	V	P	A	A	F	A	G	L	-	Y	L	F	V	R	Q	K	Y	F	V	G	Y	L	G	E	R	T	Q	S	T	P	G	Y	I	F	G	K	R	I	I	L	F	L	F	L	-	S	V	A	G	I	F	N	Y	Y	L	I	F	F	F	-	-	-	-	-	-	-	-	-	-
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