PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2j49a1  ( 149 )                  penYirAYsmLknwVdssleiykpeLsyImYPIFIY
d2j4ba1  (  18 )                    qmetsYvsLktwIedsldlfkndLlpLLyPLFIH
d2nxpa1  ( 196 )    pdvsavlsaYnqqgdptyeeyYsgLkhfIecsldchraeLsqLfYPLFVH
                                      aaaaaaaaaaaa      aaaa   aaaaaa 

                             60        70        80        90        100 
d2j49a1  ( 185 )    LFLnLVak-npvyArrFFdrFSpdfkdfhgseInrLfsVnsidhIkenev
d2j4ba1  (  52 )    IYFdlIqqnktdeAkeFFekyrgdhk---seeIkqFesIytvqhIhennf
d2nxpa1  ( 248 )    -YlELVynqheneAksFfekFhgdQecyyqddLrvLssltkkeh-kgnet
                      aaaaa   aaaaaaaaaaa333     aaaaa                

                             110       120       130       140       150 
d2j49a1  ( 234 )    AsafqshkyritMsktTlnlLlyfLnenesigGslIisVInqhLdpniv 
d2j4ba1  ( 101 )    AytfknskyhlsMgryAfdlLinfLeern---ltyIlkILnqhLdikvyv
d2nxpa1  ( 298 )    ldfrTs-kfvLrIsrdSyqlLkrhLqekq---nNQiwnIVqehLyidifd
                             bbbb aaaaaaaaaaa         aaaaaaaa  bbbb  

                     
d2j49a1              
d2j4ba1  ( 148 )    g
d2nxpa1

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2j49a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2j49a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	TAF5 subunit of TFIID	Taf5 N-terminal domain-like	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]	view
d2j4ba1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2j4ba1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	TAF5 subunit of TFIID	Taf5 N-terminal domain-like	Fungus (Encephalitozoon cuniculi) [TaxId: 6035]	view
d2nxpa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2nxpa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	TAF5 subunit of TFIID	Taf5 N-terminal domain-like	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150
-	-	-	-	-	-	-	-	-	-	-	-	-	-	P	E	N	Y	I	R	A	Y	S	M	L	K	N	W	V	D	S	S	L	E	I	Y	K	P	E	L	S	Y	I	M	Y	P	I	F	I	Y	L	F	L	N	L	V	A	K	-	N	P	V	Y	A	R	R	F	F	D	R	F	S	P	D	F	K	D	F	H	G	S	E	I	N	R	L	F	S	V	N	S	I	D	H	I	K	E	N	E	V	A	S	A	F	Q	S	H	K	Y	R	I	T	M	S	K	T	T	L	N	L	L	L	Y	F	L	N	E	N	E	S	I	G	G	S	L	I	I	S	V	I	N	Q	H	L	D	P	N	I	V	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Q	M	E	T	S	Y	V	S	L	K	T	W	I	E	D	S	L	D	L	F	K	N	D	L	L	P	L	L	Y	P	L	F	I	H	I	Y	F	D	L	I	Q	Q	N	K	T	D	E	A	K	E	F	F	E	K	Y	R	G	D	H	K	-	-	-	S	E	E	I	K	Q	F	E	S	I	Y	T	V	Q	H	I	H	E	N	N	F	A	Y	T	F	K	N	S	K	Y	H	L	S	M	G	R	Y	A	F	D	L	L	I	N	F	L	E	E	R	N	-	-	-	L	T	Y	I	L	K	I	L	N	Q	H	L	D	I	K	V	Y	V	G
P	D	V	S	A	V	L	S	A	Y	N	Q	Q	G	D	P	T	Y	E	E	Y	Y	S	G	L	K	H	F	I	E	C	S	L	D	C	H	R	A	E	L	S	Q	L	F	Y	P	L	F	V	H	-	Y	L	E	L	V	Y	N	Q	H	E	N	E	A	K	S	F	F	E	K	F	H	G	D	Q	E	C	Y	Y	Q	D	D	L	R	V	L	S	S	L	T	K	K	E	H	-	K	G	N	E	T	L	D	F	R	T	S	-	K	F	V	L	R	I	S	R	D	S	Y	Q	L	L	K	R	H	L	Q	E	K	Q	-	-	-	N	N	Q	I	W	N	I	V	Q	E	H	L	Y	I	D	I	F	D	-

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150
-	-	-	-	-	-	-	-	-	-	-	-	-	-	P	E	N	Y	I	R	A	Y	S	M	L	K	N	W	V	D	S	S	L	E	I	Y	K	P	E	L	S	Y	I	M	Y	P	I	F	I	Y	L	F	L	N	L	V	A	K	-	N	P	V	Y	A	R	R	F	F	D	R	F	S	P	D	F	K	D	F	H	G	S	E	I	N	R	L	F	S	V	N	S	I	D	H	I	K	E	N	E	V	A	S	A	F	Q	S	H	K	Y	R	I	T	M	S	K	T	T	L	N	L	L	L	Y	F	L	N	E	N	E	S	I	G	G	S	L	I	I	S	V	I	N	Q	H	L	D	P	N	I	V	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Q	M	E	T	S	Y	V	S	L	K	T	W	I	E	D	S	L	D	L	F	K	N	D	L	L	P	L	L	Y	P	L	F	I	H	I	Y	F	D	L	I	Q	Q	N	K	T	D	E	A	K	E	F	F	E	K	Y	R	G	D	H	K	-	-	-	S	E	E	I	K	Q	F	E	S	I	Y	T	V	Q	H	I	H	E	N	N	F	A	Y	T	F	K	N	S	K	Y	H	L	S	M	G	R	Y	A	F	D	L	L	I	N	F	L	E	E	R	N	-	-	-	L	T	Y	I	L	K	I	L	N	Q	H	L	D	I	K	V	Y	V	G
P	D	V	S	A	V	L	S	A	Y	N	Q	Q	G	D	P	T	Y	E	E	Y	Y	S	G	L	K	H	F	I	E	C	S	L	D	C	H	R	A	E	L	S	Q	L	F	Y	P	L	F	V	H	-	Y	L	E	L	V	Y	N	Q	H	E	N	E	A	K	S	F	F	E	K	F	H	G	D	Q	E	C	Y	Y	Q	D	D	L	R	V	L	S	S	L	T	K	K	E	H	-	K	G	N	E	T	L	D	F	R	T	S	-	K	F	V	L	R	I	S	R	D	S	Y	Q	L	L	K	R	H	L	Q	E	K	Q	-	-	-	N	N	Q	I	W	N	I	V	Q	E	H	L	Y	I	D	I	F	D	-

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150
-	-	-	-	-	-	-	-	-	-	-	-	-	-	P	E	N	Y	I	R	A	Y	S	M	L	K	N	W	V	D	S	S	L	E	I	Y	K	P	E	L	S	Y	I	M	Y	P	I	F	I	Y	L	F	L	N	L	V	A	K	-	N	P	V	Y	A	R	R	F	F	D	R	F	S	P	D	F	K	D	F	H	G	S	E	I	N	R	L	F	S	V	N	S	I	D	H	I	K	E	N	E	V	A	S	A	F	Q	S	H	K	Y	R	I	T	M	S	K	T	T	L	N	L	L	L	Y	F	L	N	E	N	E	S	I	G	G	S	L	I	I	S	V	I	N	Q	H	L	D	P	N	I	V	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Q	M	E	T	S	Y	V	S	L	K	T	W	I	E	D	S	L	D	L	F	K	N	D	L	L	P	L	L	Y	P	L	F	I	H	I	Y	F	D	L	I	Q	Q	N	K	T	D	E	A	K	E	F	F	E	K	Y	R	G	D	H	K	-	-	-	S	E	E	I	K	Q	F	E	S	I	Y	T	V	Q	H	I	H	E	N	N	F	A	Y	T	F	K	N	S	K	Y	H	L	S	M	G	R	Y	A	F	D	L	L	I	N	F	L	E	E	R	N	-	-	-	L	T	Y	I	L	K	I	L	N	Q	H	L	D	I	K	V	Y	V	G
P	D	V	S	A	V	L	S	A	Y	N	Q	Q	G	D	P	T	Y	E	E	Y	Y	S	G	L	K	H	F	I	E	C	S	L	D	C	H	R	A	E	L	S	Q	L	F	Y	P	L	F	V	H	-	Y	L	E	L	V	Y	N	Q	H	E	N	E	A	K	S	F	F	E	K	F	H	G	D	Q	E	C	Y	Y	Q	D	D	L	R	V	L	S	S	L	T	K	K	E	H	-	K	G	N	E	T	L	D	F	R	T	S	-	K	F	V	L	R	I	S	R	D	S	Y	Q	L	L	K	R	H	L	Q	E	K	Q	-	-	-	N	N	Q	I	W	N	I	V	Q	E	H	L	Y	I	D	I	F	D	-

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150
-	-	-	-	-	-	-	-	-	-	-	-	-	-	P	E	N	Y	I	R	A	Y	S	M	L	K	N	W	V	D	S	S	L	E	I	Y	K	P	E	L	S	Y	I	M	Y	P	I	F	I	Y	L	F	L	N	L	V	A	K	-	N	P	V	Y	A	R	R	F	F	D	R	F	S	P	D	F	K	D	F	H	G	S	E	I	N	R	L	F	S	V	N	S	I	D	H	I	K	E	N	E	V	A	S	A	F	Q	S	H	K	Y	R	I	T	M	S	K	T	T	L	N	L	L	L	Y	F	L	N	E	N	E	S	I	G	G	S	L	I	I	S	V	I	N	Q	H	L	D	P	N	I	V	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Q	M	E	T	S	Y	V	S	L	K	T	W	I	E	D	S	L	D	L	F	K	N	D	L	L	P	L	L	Y	P	L	F	I	H	I	Y	F	D	L	I	Q	Q	N	K	T	D	E	A	K	E	F	F	E	K	Y	R	G	D	H	K	-	-	-	S	E	E	I	K	Q	F	E	S	I	Y	T	V	Q	H	I	H	E	N	N	F	A	Y	T	F	K	N	S	K	Y	H	L	S	M	G	R	Y	A	F	D	L	L	I	N	F	L	E	E	R	N	-	-	-	L	T	Y	I	L	K	I	L	N	Q	H	L	D	I	K	V	Y	V	G
P	D	V	S	A	V	L	S	A	Y	N	Q	Q	G	D	P	T	Y	E	E	Y	Y	S	G	L	K	H	F	I	E	C	S	L	D	C	H	R	A	E	L	S	Q	L	F	Y	P	L	F	V	H	-	Y	L	E	L	V	Y	N	Q	H	E	N	E	A	K	S	F	F	E	K	F	H	G	D	Q	E	C	Y	Y	Q	D	D	L	R	V	L	S	S	L	T	K	K	E	H	-	K	G	N	E	T	L	D	F	R	T	S	-	K	F	V	L	R	I	S	R	D	S	Y	Q	L	L	K	R	H	L	Q	E	K	Q	-	-	-	N	N	Q	I	W	N	I	V	Q	E	H	L	Y	I	D	I	F	D	-