PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2iaza1  (   2 )      sniydsanelsrglr--glpeykavkaakdaIaadaeAskiftdylaf
d2oeea1  (   3 )      vnfydvaydlenalr--gseeftrlknlydeVnadesAkr-Fenfrdv
d2piha1  (   2 )    tlyskkdivqqarnlakiseteevdffkraeaqinendkvstIvnqikal
                        aaaaaaaaaaaa     aaaaaaaaaaaaaaa aaaa   aaaaaa

                             60        70        80        90        100 
d2iaza1  (  48 )    qeeiqkla----pdasfqakegfgkqiqgnslLsefftkqqqlaiylsdi
d2oeea1  (  49 )    ql----------------qaqktvalvqqhekisqL-eAeq--rsligel
d2piha1  (  53 )    qkqavnlkhyekhealkqveakidalqee-leeIpvIqefrdSq-evndl
                                         aaaaaaa  aaa a           aaaa

                             110       120 
d2iaza1  ( 100 )    ekivfepvsell           
d2oeea1  ( 101 )    nki-ikpleely           
d2piha1  ( 102 )    lqlvahtisnqvtneiitstggd
                    aaa   aaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2iaza1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2iaza1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein SP1372	YheA-like	Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]	view
d2oeea1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2oeea1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein YheA	YheA-like	Bacillus subtilis [TaxId: 1423]	view
d2piha1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2piha1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein YmcA	YmcA-like	Bacillus subtilis [TaxId: 1423]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term

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T	L	Y	S	K	K	D	I	V	Q	Q	A	R	N	L	A	K	I	S	E	T	E	E	V	D	F	F	K	R	A	E	A	Q	I	N	E	N	D	K	V	S	T	I	V	N	Q	I	K	A	L	Q	K	Q	A	V	N	L	K	H	Y	E	K	H	E	A	L	K	Q	V	E	A	K	I	D	A	L	Q	E	E	-	L	E	E	I	P	V	I	Q	E	F	R	D	S	Q	-	E	V	N	D	L	L	Q	L	V	A	H	T	I	S	N	Q	V	T	N	E	I	I	T	S	T	G	G	D

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T	L	Y	S	K	K	D	I	V	Q	Q	A	R	N	L	A	K	I	S	E	T	E	E	V	D	F	F	K	R	A	E	A	Q	I	N	E	N	D	K	V	S	T	I	V	N	Q	I	K	A	L	Q	K	Q	A	V	N	L	K	H	Y	E	K	H	E	A	L	K	Q	V	E	A	K	I	D	A	L	Q	E	E	-	L	E	E	I	P	V	I	Q	E	F	R	D	S	Q	-	E	V	N	D	L	L	Q	L	V	A	H	T	I	S	N	Q	V	T	N	E	I	I	T	S	T	G	G	D

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