PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3ka1a-  (   1 )    mdvkhiakqttktlisylTyqAVrtVigqLaetdpprslwLhqftsqesi
d4gr2a-  (   9 )       aspeakaakhlhdffTyvAVriVsaqlesynp-aymeLreFldtnsv
d4gr6a-  (  11 )         tfgdvqkqivnyfTykAVrtVlhqLy-mnppqytwFynhiitnrP
                           aaaaaaaaaaaaaaaaaaaaaaa       aaaaaaaaaa   

                             60        70        80        90        100 
d3ka1a-  (  51 )    qdGerYLeaLfre---qpdLGfrIltvrehlaemvadylpemlragiqqa
d4gr2a-  (  56 )    sdGdkFLatLmrrssrhmnlAlrIlevrsayakndfewdnmklafnvdds
d4gr6a-  (  56 )    tdGkrFLraLgke---sqeLA-rVmitrlhlygkwikad-hgiyqeisde
                       aaaaaaaaaa          aaaaaaaaaaa            aaaa

                             110     
d3ka1a-  (  98 )    nlqqraqqlermtqvse
d4gr2a-  ( 108 )    ntrlmreyv        
d4gr6a-  ( 104 )    nlalme           
                    aaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d3ka1a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3ka1a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	RuBisCo chaperone RbcX	RbcX-like	Thermosynechococcus elongatus [TaxId: 197221]	view
d4gr2a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4gr2a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Thale cress (Arabidopsis thaliana) [TaxId: 3702]	view
d4gr6a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4gr6a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Thale cress (Arabidopsis thaliana) [TaxId: 3702]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	D	V	K	H	I	A	K	Q	T	T	K	T	L	I	S	Y	L	T	Y	Q	A	V	R	T	V	I	G	Q	L	A	E	T	D	P	P	R	S	L	W	L	H	Q	F	T	S	Q	E	S	I	Q	D	G	E	R	Y	L	E	A	L	F	R	E	-	-	-	Q	P	D	L	G	F	R	I	L	T	V	R	E	H	L	A	E	M	V	A	D	Y	L	P	E	M	L	R	A	G	I	Q	Q	A	N	L	Q	Q	R	A	Q	Q	L	E	R	M	T	Q	V	S	E
-	-	-	A	S	P	E	A	K	A	A	K	H	L	H	D	F	F	T	Y	V	A	V	R	I	V	S	A	Q	L	E	S	Y	N	P	-	A	Y	M	E	L	R	E	F	L	D	T	N	S	V	S	D	G	D	K	F	L	A	T	L	M	R	R	S	S	R	H	M	N	L	A	L	R	I	L	E	V	R	S	A	Y	A	K	N	D	F	E	W	D	N	M	K	L	A	F	N	V	D	D	S	N	T	R	L	M	R	E	Y	V	-	-	-	-	-	-	-	-
-	-	-	-	-	T	F	G	D	V	Q	K	Q	I	V	N	Y	F	T	Y	K	A	V	R	T	V	L	H	Q	L	Y	-	M	N	P	P	Q	Y	T	W	F	Y	N	H	I	I	T	N	R	P	T	D	G	K	R	F	L	R	A	L	G	K	E	-	-	-	S	Q	E	L	A	-	R	V	M	I	T	R	L	H	L	Y	G	K	W	I	K	A	D	-	H	G	I	Y	Q	E	I	S	D	E	N	L	A	L	M	E	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term

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M	D	V	K	H	I	A	K	Q	T	T	K	T	L	I	S	Y	L	T	Y	Q	A	V	R	T	V	I	G	Q	L	A	E	T	D	P	P	R	S	L	W	L	H	Q	F	T	S	Q	E	S	I	Q	D	G	E	R	Y	L	E	A	L	F	R	E	-	-	-	Q	P	D	L	G	F	R	I	L	T	V	R	E	H	L	A	E	M	V	A	D	Y	L	P	E	M	L	R	A	G	I	Q	Q	A	N	L	Q	Q	R	A	Q	Q	L	E	R	M	T	Q	V	S	E
-	-	-	A	S	P	E	A	K	A	A	K	H	L	H	D	F	F	T	Y	V	A	V	R	I	V	S	A	Q	L	E	S	Y	N	P	-	A	Y	M	E	L	R	E	F	L	D	T	N	S	V	S	D	G	D	K	F	L	A	T	L	M	R	R	S	S	R	H	M	N	L	A	L	R	I	L	E	V	R	S	A	Y	A	K	N	D	F	E	W	D	N	M	K	L	A	F	N	V	D	D	S	N	T	R	L	M	R	E	Y	V	-	-	-	-	-	-	-	-
-	-	-	-	-	T	F	G	D	V	Q	K	Q	I	V	N	Y	F	T	Y	K	A	V	R	T	V	L	H	Q	L	Y	-	M	N	P	P	Q	Y	T	W	F	Y	N	H	I	I	T	N	R	P	T	D	G	K	R	F	L	R	A	L	G	K	E	-	-	-	S	Q	E	L	A	-	R	V	M	I	T	R	L	H	L	Y	G	K	W	I	K	A	D	-	H	G	I	Y	Q	E	I	S	D	E	N	L	A	L	M	E	-	-	-	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110
M	D	V	K	H	I	A	K	Q	T	T	K	T	L	I	S	Y	L	T	Y	Q	A	V	R	T	V	I	G	Q	L	A	E	T	D	P	P	R	S	L	W	L	H	Q	F	T	S	Q	E	S	I	Q	D	G	E	R	Y	L	E	A	L	F	R	E	-	-	-	Q	P	D	L	G	F	R	I	L	T	V	R	E	H	L	A	E	M	V	A	D	Y	L	P	E	M	L	R	A	G	I	Q	Q	A	N	L	Q	Q	R	A	Q	Q	L	E	R	M	T	Q	V	S	E
-	-	-	A	S	P	E	A	K	A	A	K	H	L	H	D	F	F	T	Y	V	A	V	R	I	V	S	A	Q	L	E	S	Y	N	P	-	A	Y	M	E	L	R	E	F	L	D	T	N	S	V	S	D	G	D	K	F	L	A	T	L	M	R	R	S	S	R	H	M	N	L	A	L	R	I	L	E	V	R	S	A	Y	A	K	N	D	F	E	W	D	N	M	K	L	A	F	N	V	D	D	S	N	T	R	L	M	R	E	Y	V	-	-	-	-	-	-	-	-
-	-	-	-	-	T	F	G	D	V	Q	K	Q	I	V	N	Y	F	T	Y	K	A	V	R	T	V	L	H	Q	L	Y	-	M	N	P	P	Q	Y	T	W	F	Y	N	H	I	I	T	N	R	P	T	D	G	K	R	F	L	R	A	L	G	K	E	-	-	-	S	Q	E	L	A	-	R	V	M	I	T	R	L	H	L	Y	G	K	W	I	K	A	D	-	H	G	I	Y	Q	E	I	S	D	E	N	L	A	L	M	E	-	-	-	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110
M	D	V	K	H	I	A	K	Q	T	T	K	T	L	I	S	Y	L	T	Y	Q	A	V	R	T	V	I	G	Q	L	A	E	T	D	P	P	R	S	L	W	L	H	Q	F	T	S	Q	E	S	I	Q	D	G	E	R	Y	L	E	A	L	F	R	E	-	-	-	Q	P	D	L	G	F	R	I	L	T	V	R	E	H	L	A	E	M	V	A	D	Y	L	P	E	M	L	R	A	G	I	Q	Q	A	N	L	Q	Q	R	A	Q	Q	L	E	R	M	T	Q	V	S	E
-	-	-	A	S	P	E	A	K	A	A	K	H	L	H	D	F	F	T	Y	V	A	V	R	I	V	S	A	Q	L	E	S	Y	N	P	-	A	Y	M	E	L	R	E	F	L	D	T	N	S	V	S	D	G	D	K	F	L	A	T	L	M	R	R	S	S	R	H	M	N	L	A	L	R	I	L	E	V	R	S	A	Y	A	K	N	D	F	E	W	D	N	M	K	L	A	F	N	V	D	D	S	N	T	R	L	M	R	E	Y	V	-	-	-	-	-	-	-	-
-	-	-	-	-	T	F	G	D	V	Q	K	Q	I	V	N	Y	F	T	Y	K	A	V	R	T	V	L	H	Q	L	Y	-	M	N	P	P	Q	Y	T	W	F	Y	N	H	I	I	T	N	R	P	T	D	G	K	R	F	L	R	A	L	G	K	E	-	-	-	S	Q	E	L	A	-	R	V	M	I	T	R	L	H	L	Y	G	K	W	I	K	A	D	-	H	G	I	Y	Q	E	I	S	D	E	N	L	A	L	M	E	-	-	-	-	-	-	-	-	-	-	-