PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2gsca1  (   9 )    rpherldAwrdSmeLvemIyrlTevFpdqerygLTaqLrrAAvsIPsnIa
d2rlda1  (   2 )    redkdnvVkdkSleFavrIvnLykfLvneqkefvS-qIlrSGtsIganIr
                          aaaaaaaaaaaaaaaa               aaaaaaaaaaaaa

                             60        70        80        90        100 
d2gsca1  (  59 )    eGaardysrfLsiArgsLseLdtqVqiAarlgySrseddqsVrrqvdlVf
d2rlda1  (  54 )    eAeqadfinkLniAl-eAneTeywLellirteyItreqyesInndSteIn
                    aa    aaaaaaaa   aaaaaaaaaaaaa     aaaaaaaaaaaaaaa

                             110 
d2gsca1  ( 113 )    akLtalmnalrrr
d2rlda1  ( 108 )    klLisii      
                    aaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2gsca1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2gsca1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein XCC0516	IVS-encoded protein-like	Xanthomonas campestris pv. campestris [TaxId: 340]		view
d2rlda1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2rlda1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein BT0352	IVS-encoded protein-like	Bacteroides thetaiotaomicron [TaxId: 818]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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R	P	H	E	R	L	D	A	W	R	D	S	M	E	L	V	E	M	I	Y	R	L	T	E	V	F	P	D	Q	E	R	Y	G	L	T	A	Q	L	R	R	A	A	V	S	I	P	S	N	I	A	E	G	A	A	R	D	Y	S	R	F	L	S	I	A	R	G	S	L	S	E	L	D	T	Q	V	Q	I	A	A	R	L	G	Y	S	R	S	E	D	D	Q	S	V	R	R	Q	V	D	L	V	F	A	K	L	T	A	L	M	N	A	L	R	R	R
R	E	D	K	D	N	V	V	K	D	K	S	L	E	F	A	V	R	I	V	N	L	Y	K	F	L	V	N	E	Q	K	E	F	V	S	-	Q	I	L	R	S	G	T	S	I	G	A	N	I	R	E	A	E	Q	A	D	F	I	N	K	L	N	I	A	L	-	E	A	N	E	T	E	Y	W	L	E	L	L	I	R	T	E	Y	I	T	R	E	Q	Y	E	S	I	N	N	D	S	T	E	I	N	K	L	L	I	S	I	I	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d2rlda1	A	Q8AAW0	GO:0046872
d2rlda1	A	Q8AAW0	GO:0046872

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R	P	H	E	R	L	D	A	W	R	D	S	M	E	L	V	E	M	I	Y	R	L	T	E	V	F	P	D	Q	E	R	Y	G	L	T	A	Q	L	R	R	A	A	V	S	I	P	S	N	I	A	E	G	A	A	R	D	Y	S	R	F	L	S	I	A	R	G	S	L	S	E	L	D	T	Q	V	Q	I	A	A	R	L	G	Y	S	R	S	E	D	D	Q	S	V	R	R	Q	V	D	L	V	F	A	K	L	T	A	L	M	N	A	L	R	R	R
R	E	D	K	D	N	V	V	K	D	K	S	L	E	F	A	V	R	I	V	N	L	Y	K	F	L	V	N	E	Q	K	E	F	V	S	-	Q	I	L	R	S	G	T	S	I	G	A	N	I	R	E	A	E	Q	A	D	F	I	N	K	L	N	I	A	L	-	E	A	N	E	T	E	Y	W	L	E	L	L	I	R	T	E	Y	I	T	R	E	Q	Y	E	S	I	N	N	D	S	T	E	I	N	K	L	L	I	S	I	I	-	-	-	-	-	-

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R	P	H	E	R	L	D	A	W	R	D	S	M	E	L	V	E	M	I	Y	R	L	T	E	V	F	P	D	Q	E	R	Y	G	L	T	A	Q	L	R	R	A	A	V	S	I	P	S	N	I	A	E	G	A	A	R	D	Y	S	R	F	L	S	I	A	R	G	S	L	S	E	L	D	T	Q	V	Q	I	A	A	R	L	G	Y	S	R	S	E	D	D	Q	S	V	R	R	Q	V	D	L	V	F	A	K	L	T	A	L	M	N	A	L	R	R	R
R	E	D	K	D	N	V	V	K	D	K	S	L	E	F	A	V	R	I	V	N	L	Y	K	F	L	V	N	E	Q	K	E	F	V	S	-	Q	I	L	R	S	G	T	S	I	G	A	N	I	R	E	A	E	Q	A	D	F	I	N	K	L	N	I	A	L	-	E	A	N	E	T	E	Y	W	L	E	L	L	I	R	T	E	Y	I	T	R	E	Q	Y	E	S	I	N	N	D	S	T	E	I	N	K	L	L	I	S	I	I	-	-	-	-	-	-

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R	E	D	K	D	N	V	V	K	D	K	S	L	E	F	A	V	R	I	V	N	L	Y	K	F	L	V	N	E	Q	K	E	F	V	S	-	Q	I	L	R	S	G	T	S	I	G	A	N	I	R	E	A	E	Q	A	D	F	I	N	K	L	N	I	A	L	-	E	A	N	E	T	E	Y	W	L	E	L	L	I	R	T	E	Y	I	T	R	E	Q	Y	E	S	I	N	N	D	S	T	E	I	N	K	L	L	I	S	I	I	-	-	-	-	-	-