PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3d19a1  (  11 )    dtgvtsvmfverSLnEIrfwSriMkehSffLrlgFrcedtqlieeAnqfy
d3d19a2  ( 145 )          dalpdaIIkeNvffLriMAdhAkfighlLdpserklvdtArnfs
d3dbya1  (   5 )           nyeesAlfeHqfwLkvLtdhAqfLldaLapkekeDikkAtyFv
d3dbya2  ( 126 )             vfhELhyHlvwLtdAaghAgsISggLdlvekrlkekSeeFt
                            aaaaaaaaaaaaaaaaaaaaaaaaaa     aaaaaaaaaaa

                             60        70        80        90        100 
d3d19a1  (  61 )    rlFehie-iAhsy---tn-e-tdpeqIkrFNaeVqqaAtnIwgFKrkIlg
d3d19a2  ( 189 )    ndFdelmyqAidlesmkp-qsqtaplLdqfLdqNrvsVasLrdfKktard
d3dbya1  (  48 )    etFtnLlnkVrnv------------nLmaFSkeAeqaAkeIraFKlnIiq
d3dbya2  ( 167 )    khFeqfylkAveMtgylrtelhhfpaLkkFTkdVsleLklFshFLheVee
                    aaaaaaaa                aaaaaaaaaaaaaaaaaaaaaaaaaa

                             110       120       130       140   
d3d19a1  ( 106 )    liltcklpgqnnfpllVdhTSreAdyFrkrLiqLnegkl      
d3d19a2  ( 238 )    lieqckik-SiIhplladhVfreAdrFleiIdmydvh-l      
d3dbya1  (  86 )    kqlegkIt-IhftptfInhMVneVeeYiavLefLkkgevpp    
d3dbya2  ( 217 )    lelsneVl-SvlsarmAdhMAreEÇyYLlkLAqSSglempkçnpl
                    aaa          aaaaaaaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d3d19a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3d19a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein BCE_G9241_1042	Bacillus cereus metalloprotein-like	Bacillus cereus [TaxId: 1396]	view
d3d19a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3d19a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein BCE_G9241_1042	Bacillus cereus metalloprotein-like	Bacillus cereus [TaxId: 1396]	view
d3dbya1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3dbya1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein BCE_G9241_0798	Bacillus cereus metalloprotein-like	Bacillus cereus [TaxId: 1396]	view
d3dbya2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3dbya2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein BCE_G9241_0798	Bacillus cereus metalloprotein-like	Bacillus cereus [TaxId: 1396]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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D	T	G	V	T	S	V	M	F	V	E	R	S	L	N	E	I	R	F	W	S	R	I	M	K	E	H	S	F	F	L	R	L	G	F	R	C	E	D	T	Q	L	I	E	E	A	N	Q	F	Y	R	L	F	E	H	I	E	-	I	A	H	S	Y	-	-	-	T	N	-	E	-	T	D	P	E	Q	I	K	R	F	N	A	E	V	Q	Q	A	A	T	N	I	W	G	F	K	R	K	I	L	G	L	I	L	T	C	K	L	P	G	Q	N	N	F	P	L	L	V	D	H	T	S	R	E	A	D	Y	F	R	K	R	L	I	Q	L	N	E	G	K	L	-	-	-	-	-	-
-	-	-	-	-	-	D	A	L	P	D	A	I	I	K	E	N	V	F	F	L	R	I	M	A	D	H	A	K	F	I	G	H	L	L	D	P	S	E	R	K	L	V	D	T	A	R	N	F	S	N	D	F	D	E	L	M	Y	Q	A	I	D	L	E	S	M	K	P	-	Q	S	Q	T	A	P	L	L	D	Q	F	L	D	Q	N	R	V	S	V	A	S	L	R	D	F	K	K	T	A	R	D	L	I	E	Q	C	K	I	K	-	S	I	I	H	P	L	L	A	D	H	V	F	R	E	A	D	R	F	L	E	I	I	D	M	Y	D	V	H	-	L	-	-	-	-	-	-
-	-	-	-	-	-	-	N	Y	E	E	S	A	L	F	E	H	Q	F	W	L	K	V	L	T	D	H	A	Q	F	L	L	D	A	L	A	P	K	E	K	E	D	I	K	K	A	T	Y	F	V	E	T	F	T	N	L	L	N	K	V	R	N	V	-	-	-	-	-	-	-	-	-	-	-	-	N	L	M	A	F	S	K	E	A	E	Q	A	A	K	E	I	R	A	F	K	L	N	I	I	Q	K	Q	L	E	G	K	I	T	-	I	H	F	T	P	T	F	I	N	H	M	V	N	E	V	E	E	Y	I	A	V	L	E	F	L	K	K	G	E	V	P	P	-	-	-	-
-	-	-	-	-	-	-	-	-	V	F	H	E	L	H	Y	H	L	V	W	L	T	D	A	A	G	H	A	G	S	I	S	G	G	L	D	L	V	E	K	R	L	K	E	K	S	E	E	F	T	K	H	F	E	Q	F	Y	L	K	A	V	E	M	T	G	Y	L	R	T	E	L	H	H	F	P	A	L	K	K	F	T	K	D	V	S	L	E	L	K	L	F	S	H	F	L	H	E	V	E	E	L	E	L	S	N	E	V	L	-	S	V	L	S	A	R	M	A	D	H	M	A	R	E	E	C	Y	Y	L	L	K	L	A	Q	S	S	G	L	E	M	P	K	C	N	P	L

Member	Chain	UniProtKB	GO term

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D	T	G	V	T	S	V	M	F	V	E	R	S	L	N	E	I	R	F	W	S	R	I	M	K	E	H	S	F	F	L	R	L	G	F	R	C	E	D	T	Q	L	I	E	E	A	N	Q	F	Y	R	L	F	E	H	I	E	-	I	A	H	S	Y	-	-	-	T	N	-	E	-	T	D	P	E	Q	I	K	R	F	N	A	E	V	Q	Q	A	A	T	N	I	W	G	F	K	R	K	I	L	G	L	I	L	T	C	K	L	P	G	Q	N	N	F	P	L	L	V	D	H	T	S	R	E	A	D	Y	F	R	K	R	L	I	Q	L	N	E	G	K	L	-	-	-	-	-	-
-	-	-	-	-	-	D	A	L	P	D	A	I	I	K	E	N	V	F	F	L	R	I	M	A	D	H	A	K	F	I	G	H	L	L	D	P	S	E	R	K	L	V	D	T	A	R	N	F	S	N	D	F	D	E	L	M	Y	Q	A	I	D	L	E	S	M	K	P	-	Q	S	Q	T	A	P	L	L	D	Q	F	L	D	Q	N	R	V	S	V	A	S	L	R	D	F	K	K	T	A	R	D	L	I	E	Q	C	K	I	K	-	S	I	I	H	P	L	L	A	D	H	V	F	R	E	A	D	R	F	L	E	I	I	D	M	Y	D	V	H	-	L	-	-	-	-	-	-
-	-	-	-	-	-	-	N	Y	E	E	S	A	L	F	E	H	Q	F	W	L	K	V	L	T	D	H	A	Q	F	L	L	D	A	L	A	P	K	E	K	E	D	I	K	K	A	T	Y	F	V	E	T	F	T	N	L	L	N	K	V	R	N	V	-	-	-	-	-	-	-	-	-	-	-	-	N	L	M	A	F	S	K	E	A	E	Q	A	A	K	E	I	R	A	F	K	L	N	I	I	Q	K	Q	L	E	G	K	I	T	-	I	H	F	T	P	T	F	I	N	H	M	V	N	E	V	E	E	Y	I	A	V	L	E	F	L	K	K	G	E	V	P	P	-	-	-	-
-	-	-	-	-	-	-	-	-	V	F	H	E	L	H	Y	H	L	V	W	L	T	D	A	A	G	H	A	G	S	I	S	G	G	L	D	L	V	E	K	R	L	K	E	K	S	E	E	F	T	K	H	F	E	Q	F	Y	L	K	A	V	E	M	T	G	Y	L	R	T	E	L	H	H	F	P	A	L	K	K	F	T	K	D	V	S	L	E	L	K	L	F	S	H	F	L	H	E	V	E	E	L	E	L	S	N	E	V	L	-	S	V	L	S	A	R	M	A	D	H	M	A	R	E	E	C	Y	Y	L	L	K	L	A	Q	S	S	G	L	E	M	P	K	C	N	P	L

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D	T	G	V	T	S	V	M	F	V	E	R	S	L	N	E	I	R	F	W	S	R	I	M	K	E	H	S	F	F	L	R	L	G	F	R	C	E	D	T	Q	L	I	E	E	A	N	Q	F	Y	R	L	F	E	H	I	E	-	I	A	H	S	Y	-	-	-	T	N	-	E	-	T	D	P	E	Q	I	K	R	F	N	A	E	V	Q	Q	A	A	T	N	I	W	G	F	K	R	K	I	L	G	L	I	L	T	C	K	L	P	G	Q	N	N	F	P	L	L	V	D	H	T	S	R	E	A	D	Y	F	R	K	R	L	I	Q	L	N	E	G	K	L	-	-	-	-	-	-
-	-	-	-	-	-	D	A	L	P	D	A	I	I	K	E	N	V	F	F	L	R	I	M	A	D	H	A	K	F	I	G	H	L	L	D	P	S	E	R	K	L	V	D	T	A	R	N	F	S	N	D	F	D	E	L	M	Y	Q	A	I	D	L	E	S	M	K	P	-	Q	S	Q	T	A	P	L	L	D	Q	F	L	D	Q	N	R	V	S	V	A	S	L	R	D	F	K	K	T	A	R	D	L	I	E	Q	C	K	I	K	-	S	I	I	H	P	L	L	A	D	H	V	F	R	E	A	D	R	F	L	E	I	I	D	M	Y	D	V	H	-	L	-	-	-	-	-	-
-	-	-	-	-	-	-	N	Y	E	E	S	A	L	F	E	H	Q	F	W	L	K	V	L	T	D	H	A	Q	F	L	L	D	A	L	A	P	K	E	K	E	D	I	K	K	A	T	Y	F	V	E	T	F	T	N	L	L	N	K	V	R	N	V	-	-	-	-	-	-	-	-	-	-	-	-	N	L	M	A	F	S	K	E	A	E	Q	A	A	K	E	I	R	A	F	K	L	N	I	I	Q	K	Q	L	E	G	K	I	T	-	I	H	F	T	P	T	F	I	N	H	M	V	N	E	V	E	E	Y	I	A	V	L	E	F	L	K	K	G	E	V	P	P	-	-	-	-
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D	T	G	V	T	S	V	M	F	V	E	R	S	L	N	E	I	R	F	W	S	R	I	M	K	E	H	S	F	F	L	R	L	G	F	R	C	E	D	T	Q	L	I	E	E	A	N	Q	F	Y	R	L	F	E	H	I	E	-	I	A	H	S	Y	-	-	-	T	N	-	E	-	T	D	P	E	Q	I	K	R	F	N	A	E	V	Q	Q	A	A	T	N	I	W	G	F	K	R	K	I	L	G	L	I	L	T	C	K	L	P	G	Q	N	N	F	P	L	L	V	D	H	T	S	R	E	A	D	Y	F	R	K	R	L	I	Q	L	N	E	G	K	L	-	-	-	-	-	-
-	-	-	-	-	-	D	A	L	P	D	A	I	I	K	E	N	V	F	F	L	R	I	M	A	D	H	A	K	F	I	G	H	L	L	D	P	S	E	R	K	L	V	D	T	A	R	N	F	S	N	D	F	D	E	L	M	Y	Q	A	I	D	L	E	S	M	K	P	-	Q	S	Q	T	A	P	L	L	D	Q	F	L	D	Q	N	R	V	S	V	A	S	L	R	D	F	K	K	T	A	R	D	L	I	E	Q	C	K	I	K	-	S	I	I	H	P	L	L	A	D	H	V	F	R	E	A	D	R	F	L	E	I	I	D	M	Y	D	V	H	-	L	-	-	-	-	-	-
-	-	-	-	-	-	-	N	Y	E	E	S	A	L	F	E	H	Q	F	W	L	K	V	L	T	D	H	A	Q	F	L	L	D	A	L	A	P	K	E	K	E	D	I	K	K	A	T	Y	F	V	E	T	F	T	N	L	L	N	K	V	R	N	V	-	-	-	-	-	-	-	-	-	-	-	-	N	L	M	A	F	S	K	E	A	E	Q	A	A	K	E	I	R	A	F	K	L	N	I	I	Q	K	Q	L	E	G	K	I	T	-	I	H	F	T	P	T	F	I	N	H	M	V	N	E	V	E	E	Y	I	A	V	L	E	F	L	K	K	G	E	V	P	P	-	-	-	-
-	-	-	-	-	-	-	-	-	V	F	H	E	L	H	Y	H	L	V	W	L	T	D	A	A	G	H	A	G	S	I	S	G	G	L	D	L	V	E	K	R	L	K	E	K	S	E	E	F	T	K	H	F	E	Q	F	Y	L	K	A	V	E	M	T	G	Y	L	R	T	E	L	H	H	F	P	A	L	K	K	F	T	K	D	V	S	L	E	L	K	L	F	S	H	F	L	H	E	V	E	E	L	E	L	S	N	E	V	L	-	S	V	L	S	A	R	M	A	D	H	M	A	R	E	E	C	Y	Y	L	L	K	L	A	Q	S	S	G	L	E	M	P	K	C	N	P	L