PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2p61a1  (  34 )      effdiledvkedhfeklLeeaveeVidSGneLvrsptpsnlkrYknaI
d2qupa-  (  24 )    gvsfsevmgkqrdekayerLqalmskIddQGklLSetrtieeLrkYkelV
                       aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa   aaaaaaaaaaa

                             60        70        80        90        100 
d2p61a1  (  82 )    keFlklIekkiykl----nsgrarLhlvveeVneklmdLtekimknewqt
d2qupa-  (  74 )    keFvgdAveLGlrleernrrgrtkIykIvkeVdrklldLtdaVlakekkg
                    aaaaaaaaaaaa         aaaaaaaaaaaaaaaaaaaaaaa      

                             110       
d2p61a1  ( 134 )    InlaarIeeInglIlnLyr
d2qupa-  ( 127 )    ldIlnmvgeIkglLinIya
                      aaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2p61a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2p61a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein TM1646	TM1646-like	Thermotoga maritima [TaxId: 2336]		view
d2qupa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2qupa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Bacillus halodurans [TaxId: 86665]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110
-	-	E	F	F	D	I	L	E	D	V	K	E	D	H	F	E	K	L	L	E	E	A	V	E	E	V	I	D	S	G	N	E	L	V	R	S	P	T	P	S	N	L	K	R	Y	K	N	A	I	K	E	F	L	K	L	I	E	K	K	I	Y	K	L	-	-	-	-	N	S	G	R	A	R	L	H	L	V	V	E	E	V	N	E	K	L	M	D	L	T	E	K	I	M	K	N	E	W	Q	T	I	N	L	A	A	R	I	E	E	I	N	G	L	I	L	N	L	Y	R
G	V	S	F	S	E	V	M	G	K	Q	R	D	E	K	A	Y	E	R	L	Q	A	L	M	S	K	I	D	D	Q	G	K	L	L	S	E	T	R	T	I	E	E	L	R	K	Y	K	E	L	V	K	E	F	V	G	D	A	V	E	L	G	L	R	L	E	E	R	N	R	R	G	R	T	K	I	Y	K	I	V	K	E	V	D	R	K	L	L	D	L	T	D	A	V	L	A	K	E	K	K	G	L	D	I	L	N	M	V	G	E	I	K	G	L	L	I	N	I	Y	A

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90										100										110
-	-	E	F	F	D	I	L	E	D	V	K	E	D	H	F	E	K	L	L	E	E	A	V	E	E	V	I	D	S	G	N	E	L	V	R	S	P	T	P	S	N	L	K	R	Y	K	N	A	I	K	E	F	L	K	L	I	E	K	K	I	Y	K	L	-	-	-	-	N	S	G	R	A	R	L	H	L	V	V	E	E	V	N	E	K	L	M	D	L	T	E	K	I	M	K	N	E	W	Q	T	I	N	L	A	A	R	I	E	E	I	N	G	L	I	L	N	L	Y	R
G	V	S	F	S	E	V	M	G	K	Q	R	D	E	K	A	Y	E	R	L	Q	A	L	M	S	K	I	D	D	Q	G	K	L	L	S	E	T	R	T	I	E	E	L	R	K	Y	K	E	L	V	K	E	F	V	G	D	A	V	E	L	G	L	R	L	E	E	R	N	R	R	G	R	T	K	I	Y	K	I	V	K	E	V	D	R	K	L	L	D	L	T	D	A	V	L	A	K	E	K	K	G	L	D	I	L	N	M	V	G	E	I	K	G	L	L	I	N	I	Y	A

									10										20										30										40										50										60										70										80										90										100										110
-	-	E	F	F	D	I	L	E	D	V	K	E	D	H	F	E	K	L	L	E	E	A	V	E	E	V	I	D	S	G	N	E	L	V	R	S	P	T	P	S	N	L	K	R	Y	K	N	A	I	K	E	F	L	K	L	I	E	K	K	I	Y	K	L	-	-	-	-	N	S	G	R	A	R	L	H	L	V	V	E	E	V	N	E	K	L	M	D	L	T	E	K	I	M	K	N	E	W	Q	T	I	N	L	A	A	R	I	E	E	I	N	G	L	I	L	N	L	Y	R
G	V	S	F	S	E	V	M	G	K	Q	R	D	E	K	A	Y	E	R	L	Q	A	L	M	S	K	I	D	D	Q	G	K	L	L	S	E	T	R	T	I	E	E	L	R	K	Y	K	E	L	V	K	E	F	V	G	D	A	V	E	L	G	L	R	L	E	E	R	N	R	R	G	R	T	K	I	Y	K	I	V	K	E	V	D	R	K	L	L	D	L	T	D	A	V	L	A	K	E	K	K	G	L	D	I	L	N	M	V	G	E	I	K	G	L	L	I	N	I	Y	A

									10										20										30										40										50										60										70										80										90										100										110
-	-	E	F	F	D	I	L	E	D	V	K	E	D	H	F	E	K	L	L	E	E	A	V	E	E	V	I	D	S	G	N	E	L	V	R	S	P	T	P	S	N	L	K	R	Y	K	N	A	I	K	E	F	L	K	L	I	E	K	K	I	Y	K	L	-	-	-	-	N	S	G	R	A	R	L	H	L	V	V	E	E	V	N	E	K	L	M	D	L	T	E	K	I	M	K	N	E	W	Q	T	I	N	L	A	A	R	I	E	E	I	N	G	L	I	L	N	L	Y	R
G	V	S	F	S	E	V	M	G	K	Q	R	D	E	K	A	Y	E	R	L	Q	A	L	M	S	K	I	D	D	Q	G	K	L	L	S	E	T	R	T	I	E	E	L	R	K	Y	K	E	L	V	K	E	F	V	G	D	A	V	E	L	G	L	R	L	E	E	R	N	R	R	G	R	T	K	I	Y	K	I	V	K	E	V	D	R	K	L	L	D	L	T	D	A	V	L	A	K	E	K	K	G	L	D	I	L	N	M	V	G	E	I	K	G	L	L	I	N	I	Y	A