PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2oo2a1  (   2 )    eeelrreTlkwLerIeervke---Iegd---egfmrnIeayIsdSryfle
d2pmra1  (   3 )       crerIekdlelLeknlmeMksiklsddeeavverAlnyrddSvyyLe
                        aaaaaaaaaaaaaa             aaaaaaaaaaaaaaaaaaa

                             60        70        80  
d2oo2a1  (  46 )    kgdlvrAfecVvwAwawLeiGlevgkLhet
d2pmra1  (  50 )    kgdhitSfgcItyAhglLdsLrmlhrii  
                       aaaaaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2oo2a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2oo2a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein AF1782	AF1782-like	Archaeoglobus fulgidus [TaxId: 2234]		view
d2pmra1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2pmra1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein MTH1690	AF1782-like	Methanobacterium thermoautotrophicum [TaxId: 145262]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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E	E	E	L	R	R	E	T	L	K	W	L	E	R	I	E	E	R	V	K	E	-	-	-	I	E	G	D	-	-	-	E	G	F	M	R	N	I	E	A	Y	I	S	D	S	R	Y	F	L	E	K	G	D	L	V	R	A	F	E	C	V	V	W	A	W	A	W	L	E	I	G	L	E	V	G	K	L	H	E	T
-	-	-	C	R	E	R	I	E	K	D	L	E	L	L	E	K	N	L	M	E	M	K	S	I	K	L	S	D	D	E	E	A	V	V	E	R	A	L	N	Y	R	D	D	S	V	Y	Y	L	E	K	G	D	H	I	T	S	F	G	C	I	T	Y	A	H	G	L	L	D	S	L	R	M	L	H	R	I	I	-	-

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80
E	E	E	L	R	R	E	T	L	K	W	L	E	R	I	E	E	R	V	K	E	-	-	-	I	E	G	D	-	-	-	E	G	F	M	R	N	I	E	A	Y	I	S	D	S	R	Y	F	L	E	K	G	D	L	V	R	A	F	E	C	V	V	W	A	W	A	W	L	E	I	G	L	E	V	G	K	L	H	E	T
-	-	-	C	R	E	R	I	E	K	D	L	E	L	L	E	K	N	L	M	E	M	K	S	I	K	L	S	D	D	E	E	A	V	V	E	R	A	L	N	Y	R	D	D	S	V	Y	Y	L	E	K	G	D	H	I	T	S	F	G	C	I	T	Y	A	H	G	L	L	D	S	L	R	M	L	H	R	I	I	-	-

									10										20										30										40										50										60										70										80
E	E	E	L	R	R	E	T	L	K	W	L	E	R	I	E	E	R	V	K	E	-	-	-	I	E	G	D	-	-	-	E	G	F	M	R	N	I	E	A	Y	I	S	D	S	R	Y	F	L	E	K	G	D	L	V	R	A	F	E	C	V	V	W	A	W	A	W	L	E	I	G	L	E	V	G	K	L	H	E	T
-	-	-	C	R	E	R	I	E	K	D	L	E	L	L	E	K	N	L	M	E	M	K	S	I	K	L	S	D	D	E	E	A	V	V	E	R	A	L	N	Y	R	D	D	S	V	Y	Y	L	E	K	G	D	H	I	T	S	F	G	C	I	T	Y	A	H	G	L	L	D	S	L	R	M	L	H	R	I	I	-	-

									10										20										30										40										50										60										70										80
E	E	E	L	R	R	E	T	L	K	W	L	E	R	I	E	E	R	V	K	E	-	-	-	I	E	G	D	-	-	-	E	G	F	M	R	N	I	E	A	Y	I	S	D	S	R	Y	F	L	E	K	G	D	L	V	R	A	F	E	C	V	V	W	A	W	A	W	L	E	I	G	L	E	V	G	K	L	H	E	T
-	-	-	C	R	E	R	I	E	K	D	L	E	L	L	E	K	N	L	M	E	M	K	S	I	K	L	S	D	D	E	E	A	V	V	E	R	A	L	N	Y	R	D	D	S	V	Y	Y	L	E	K	G	D	H	I	T	S	F	G	C	I	T	Y	A	H	G	L	L	D	S	L	R	M	L	H	R	I	I	-	-