PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2nr9a1  (   4 )    flaqqgkiTliltalCvliyiaQqlgfeddimylmhYPayeeqdsevwRy
d2xova-  (  92 )       ragpvTwvmmiaCvvvfiaMqilgdqevmlwlAwPfdptlkfefwRy
                          aaaaaaaaaaaaaaaaaa   aaaaaaaa     333     aa

                             60        70        80        90        100 
d2nr9a1  (  54 )    isHTlVHlsnlHilfnlswFfiFGGmIErtfgsvkLlmLYvvASaiTGyv
d2xova-  ( 139 )    ftHalMHfslmHilfNllwWwyLGgaVEkrlgsgkLivItliSallSGyv
                    aa333    aaaaaaaaaaaaaaaaaaaaaa aaaaaaaaaaaaaaaaaa

                             110       120       130       140       150 
d2nr9a1  ( 104 )    QnyvsgpaFfGLSGVVyAVLGYvfiRdklnhhlfdlpegfftmllvgial
d2xova-  ( 189 )    QqkfsgpwFGGLSGVVYALMgYVwlrGerdpsgIyLq-rgliifAliWiv
                    aaaaa       aaaaaaaaaaaaaaaa                     a

                             160       170       180       
d2nr9a1  ( 154 )    gfisplfgveMgnaAHisGlivGliwGfidSklrknsle
d2xova-  ( 239 )    aGwfdlfgMsMangAHiaGlavGlamAfvdSln      
                    aaa         aaaaaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2nr9a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2nr9a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	GlpG homolog HI0618	Rhomboid-like	Haemophilus influenzae [TaxId: 727]		view
d2xova- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2xova- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	GlpG	Rhomboid-like	Escherichia coli [TaxId: 562]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d2nr9a1	A	P44783	GO:0004252
d2nr9a1	A	P44783	GO:0005886
d2nr9a1	A	P44783	GO:0006508
d2nr9a1	A	P44783	GO:0008236
d2nr9a1	A	P44783	GO:0016020
d2nr9a1	A	P44783	GO:0042802

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