PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2bjqa1  ( 175 )    g--ikiyddtwldlkyrdpFpaarnPiaAGgrkVkSddgtemfQyVALwy
d2bjqa2  (   5 )         efeDtwayntIgspfp--dnpvrVkgqq---------nmyVALWy
d2bjra2  ( 185 )    kpivrvtlnewadfrcgdpwPtvgtpvrAlgrsLdTLpgEnpdQyVAlwy
                             bbbbbb                             bbbbbb

                             60        70        80        90        100 
d2bjqa1  ( 223 )    ehgqpVFGRAypdsadkTlAnFGwggqenaga-eI-gsFqMLVvpd----
d2bjqa2  (  39 )    kfgkpiHGrAwndn-gnVeCSFPynkveltgardLggqIqILtateqdpt
d2bjra2  ( 235 )    qsgePV-gRIwndg-gkIaACFGwggheyrq--kI-gsIqILYelp----
                    b  bbb bbbbb     bbbbbbb  bbb        bbbbbb       

                             110       120       130       140       150 
d2bjqa1  ( 267 )    --pdilgfeykwipYkeAka--ggpfkplhvg----eCTPCLLkdangtE
d2bjqa2  (  88 )    eQfkktgfwyeWrpYkdrvndq--lLqlVrcg----qSTPViMkTkdgkd
d2bjra2  ( 277 )    --eairGFdYdwkpFpeAaqfgakewIPVhvdhhkgniSpAVLivd-gke
                              bb              bb          bbbbbb     b

                             160       170       180       190   
d2bjqa1  ( 309 )    RLGNLhmgmekATAGlagkdsavsgpaVgdflVLCr         
d2bjqa2  ( 132 )    LLGyIdmstevAaVGvsgkseqvaggpIqdmlVLFrnvkappk  
d2bjra2  ( 324 )    ILgkAdIrnerATIGyggtEkvlvgpaVhsC-VLCRkakpgctId
                    bbbbbb    bbb         bb 333     bbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2bjqa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2bjqa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Sperm motility protein MFP2	MFPT repeat	Pig roundworm (Ascaris suum), isoform A [TaxId: 6253]	view
d2bjqa2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2bjqa2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Sperm motility protein MFP2	MFPT repeat	Pig roundworm (Ascaris suum), isoform A [TaxId: 6253]	view
d2bjra2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2bjra2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Sperm motility protein MFP2	MFPT repeat	Pig roundworm (Ascaris suum), isoform B [TaxId: 6253]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	-	E	F	E	D	T	W	A	Y	N	T	I	G	S	P	F	P	-	-	D	N	P	V	R	V	K	G	Q	Q	-	-	-	-	-	-	-	-	-	N	M	Y	V	A	L	W	Y	K	F	G	K	P	I	H	G	R	A	W	N	D	N	-	G	N	V	E	C	S	F	P	Y	N	K	V	E	L	T	G	A	R	D	L	G	G	Q	I	Q	I	L	T	A	T	E	Q	D	P	T	E	Q	F	K	K	T	G	F	W	Y	E	W	R	P	Y	K	D	R	V	N	D	Q	-	-	L	L	Q	L	V	R	C	G	-	-	-	-	Q	S	T	P	V	I	M	K	T	K	D	G	K	D	L	L	G	Y	I	D	M	S	T	E	V	A	A	V	G	V	S	G	K	S	E	Q	V	A	G	G	P	I	Q	D	M	L	V	L	F	R	N	V	K	A	P	P	K	-	-
K	P	I	V	R	V	T	L	N	E	W	A	D	F	R	C	G	D	P	W	P	T	V	G	T	P	V	R	A	L	G	R	S	L	D	T	L	P	G	E	N	P	D	Q	Y	V	A	L	W	Y	Q	S	G	E	P	V	-	G	R	I	W	N	D	G	-	G	K	I	A	A	C	F	G	W	G	G	H	E	Y	R	Q	-	-	K	I	-	G	S	I	Q	I	L	Y	E	L	P	-	-	-	-	-	-	E	A	I	R	G	F	D	Y	D	W	K	P	F	P	E	A	A	Q	F	G	A	K	E	W	I	P	V	H	V	D	H	H	K	G	N	I	S	P	A	V	L	I	V	D	-	G	K	E	I	L	G	K	A	D	I	R	N	E	R	A	T	I	G	Y	G	G	T	E	K	V	L	V	G	P	A	V	H	S	C	-	V	L	C	R	K	A	K	P	G	C	T	I	D

Member	Chain	UniProtKB	GO term
d2bjra2	A	Q7YXJ9	GO:0046872

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-	-	-	-	-	E	F	E	D	T	W	A	Y	N	T	I	G	S	P	F	P	-	-	D	N	P	V	R	V	K	G	Q	Q	-	-	-	-	-	-	-	-	-	N	M	Y	V	A	L	W	Y	K	F	G	K	P	I	H	G	R	A	W	N	D	N	-	G	N	V	E	C	S	F	P	Y	N	K	V	E	L	T	G	A	R	D	L	G	G	Q	I	Q	I	L	T	A	T	E	Q	D	P	T	E	Q	F	K	K	T	G	F	W	Y	E	W	R	P	Y	K	D	R	V	N	D	Q	-	-	L	L	Q	L	V	R	C	G	-	-	-	-	Q	S	T	P	V	I	M	K	T	K	D	G	K	D	L	L	G	Y	I	D	M	S	T	E	V	A	A	V	G	V	S	G	K	S	E	Q	V	A	G	G	P	I	Q	D	M	L	V	L	F	R	N	V	K	A	P	P	K	-	-
K	P	I	V	R	V	T	L	N	E	W	A	D	F	R	C	G	D	P	W	P	T	V	G	T	P	V	R	A	L	G	R	S	L	D	T	L	P	G	E	N	P	D	Q	Y	V	A	L	W	Y	Q	S	G	E	P	V	-	G	R	I	W	N	D	G	-	G	K	I	A	A	C	F	G	W	G	G	H	E	Y	R	Q	-	-	K	I	-	G	S	I	Q	I	L	Y	E	L	P	-	-	-	-	-	-	E	A	I	R	G	F	D	Y	D	W	K	P	F	P	E	A	A	Q	F	G	A	K	E	W	I	P	V	H	V	D	H	H	K	G	N	I	S	P	A	V	L	I	V	D	-	G	K	E	I	L	G	K	A	D	I	R	N	E	R	A	T	I	G	Y	G	G	T	E	K	V	L	V	G	P	A	V	H	S	C	-	V	L	C	R	K	A	K	P	G	C	T	I	D

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-	-	-	-	-	E	F	E	D	T	W	A	Y	N	T	I	G	S	P	F	P	-	-	D	N	P	V	R	V	K	G	Q	Q	-	-	-	-	-	-	-	-	-	N	M	Y	V	A	L	W	Y	K	F	G	K	P	I	H	G	R	A	W	N	D	N	-	G	N	V	E	C	S	F	P	Y	N	K	V	E	L	T	G	A	R	D	L	G	G	Q	I	Q	I	L	T	A	T	E	Q	D	P	T	E	Q	F	K	K	T	G	F	W	Y	E	W	R	P	Y	K	D	R	V	N	D	Q	-	-	L	L	Q	L	V	R	C	G	-	-	-	-	Q	S	T	P	V	I	M	K	T	K	D	G	K	D	L	L	G	Y	I	D	M	S	T	E	V	A	A	V	G	V	S	G	K	S	E	Q	V	A	G	G	P	I	Q	D	M	L	V	L	F	R	N	V	K	A	P	P	K	-	-
K	P	I	V	R	V	T	L	N	E	W	A	D	F	R	C	G	D	P	W	P	T	V	G	T	P	V	R	A	L	G	R	S	L	D	T	L	P	G	E	N	P	D	Q	Y	V	A	L	W	Y	Q	S	G	E	P	V	-	G	R	I	W	N	D	G	-	G	K	I	A	A	C	F	G	W	G	G	H	E	Y	R	Q	-	-	K	I	-	G	S	I	Q	I	L	Y	E	L	P	-	-	-	-	-	-	E	A	I	R	G	F	D	Y	D	W	K	P	F	P	E	A	A	Q	F	G	A	K	E	W	I	P	V	H	V	D	H	H	K	G	N	I	S	P	A	V	L	I	V	D	-	G	K	E	I	L	G	K	A	D	I	R	N	E	R	A	T	I	G	Y	G	G	T	E	K	V	L	V	G	P	A	V	H	S	C	-	V	L	C	R	K	A	K	P	G	C	T	I	D

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-	-	-	-	-	E	F	E	D	T	W	A	Y	N	T	I	G	S	P	F	P	-	-	D	N	P	V	R	V	K	G	Q	Q	-	-	-	-	-	-	-	-	-	N	M	Y	V	A	L	W	Y	K	F	G	K	P	I	H	G	R	A	W	N	D	N	-	G	N	V	E	C	S	F	P	Y	N	K	V	E	L	T	G	A	R	D	L	G	G	Q	I	Q	I	L	T	A	T	E	Q	D	P	T	E	Q	F	K	K	T	G	F	W	Y	E	W	R	P	Y	K	D	R	V	N	D	Q	-	-	L	L	Q	L	V	R	C	G	-	-	-	-	Q	S	T	P	V	I	M	K	T	K	D	G	K	D	L	L	G	Y	I	D	M	S	T	E	V	A	A	V	G	V	S	G	K	S	E	Q	V	A	G	G	P	I	Q	D	M	L	V	L	F	R	N	V	K	A	P	P	K	-	-
K	P	I	V	R	V	T	L	N	E	W	A	D	F	R	C	G	D	P	W	P	T	V	G	T	P	V	R	A	L	G	R	S	L	D	T	L	P	G	E	N	P	D	Q	Y	V	A	L	W	Y	Q	S	G	E	P	V	-	G	R	I	W	N	D	G	-	G	K	I	A	A	C	F	G	W	G	G	H	E	Y	R	Q	-	-	K	I	-	G	S	I	Q	I	L	Y	E	L	P	-	-	-	-	-	-	E	A	I	R	G	F	D	Y	D	W	K	P	F	P	E	A	A	Q	F	G	A	K	E	W	I	P	V	H	V	D	H	H	K	G	N	I	S	P	A	V	L	I	V	D	-	G	K	E	I	L	G	K	A	D	I	R	N	E	R	A	T	I	G	Y	G	G	T	E	K	V	L	V	G	P	A	V	H	S	C	-	V	L	C	R	K	A	K	P	G	C	T	I	D