PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3iam13  ( 334 )    rvSmVdamwnlTrfyaheScgkctpcregVagfMvnlFakIGtGqGeekd
d6zk913  ( 340 )    stdiVkaiarlIefykhescgqctpcregVd-wMnkvMarFvrGdarpae
                       aaaaaaaaaaaaaa      aaaaaaaa aaaaaaaaa       aa

                             60        70        80        90        100 
d3iam13  ( 384 )    VenLealLplIegrSfcplAdaAVwpVkgSLrhfkdqYlaLArek---rp
d6zk913  ( 389 )    IdsLweiSkqIeghTicalGdgAAwpVQgLIrhfrpeLeerMqrfaqqhq
                    aaaaaaaaaaa       aaaaaaaaaaaaaaaaaaaaaaaaa       

                            
d3iam13  ( 431 )    Vprpslwr
d6zk913

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d3iam13 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3iam13 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Thermus thermophilus HB8 [TaxId: 300852]		view
d6zk913 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6zk913 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Sheep (Ovis aries) [TaxId: 9940]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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R	V	S	M	V	D	A	M	W	N	L	T	R	F	Y	A	H	E	S	C	G	K	C	T	P	C	R	E	G	V	A	G	F	M	V	N	L	F	A	K	I	G	T	G	Q	G	E	E	K	D	V	E	N	L	E	A	L	L	P	L	I	E	G	R	S	F	C	P	L	A	D	A	A	V	W	P	V	K	G	S	L	R	H	F	K	D	Q	Y	L	A	L	A	R	E	K	-	-	-	R	P	V	P	R	P	S	L	W	R
S	T	D	I	V	K	A	I	A	R	L	I	E	F	Y	K	H	E	S	C	G	Q	C	T	P	C	R	E	G	V	D	-	W	M	N	K	V	M	A	R	F	V	R	G	D	A	R	P	A	E	I	D	S	L	W	E	I	S	K	Q	I	E	G	H	T	I	C	A	L	G	D	G	A	A	W	P	V	Q	G	L	I	R	H	F	R	P	E	L	E	E	R	M	Q	R	F	A	Q	Q	H	Q	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term

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R	V	S	M	V	D	A	M	W	N	L	T	R	F	Y	A	H	E	S	C	G	K	C	T	P	C	R	E	G	V	A	G	F	M	V	N	L	F	A	K	I	G	T	G	Q	G	E	E	K	D	V	E	N	L	E	A	L	L	P	L	I	E	G	R	S	F	C	P	L	A	D	A	A	V	W	P	V	K	G	S	L	R	H	F	K	D	Q	Y	L	A	L	A	R	E	K	-	-	-	R	P	V	P	R	P	S	L	W	R
S	T	D	I	V	K	A	I	A	R	L	I	E	F	Y	K	H	E	S	C	G	Q	C	T	P	C	R	E	G	V	D	-	W	M	N	K	V	M	A	R	F	V	R	G	D	A	R	P	A	E	I	D	S	L	W	E	I	S	K	Q	I	E	G	H	T	I	C	A	L	G	D	G	A	A	W	P	V	Q	G	L	I	R	H	F	R	P	E	L	E	E	R	M	Q	R	F	A	Q	Q	H	Q	-	-	-	-	-	-	-	-

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R	V	S	M	V	D	A	M	W	N	L	T	R	F	Y	A	H	E	S	C	G	K	C	T	P	C	R	E	G	V	A	G	F	M	V	N	L	F	A	K	I	G	T	G	Q	G	E	E	K	D	V	E	N	L	E	A	L	L	P	L	I	E	G	R	S	F	C	P	L	A	D	A	A	V	W	P	V	K	G	S	L	R	H	F	K	D	Q	Y	L	A	L	A	R	E	K	-	-	-	R	P	V	P	R	P	S	L	W	R
S	T	D	I	V	K	A	I	A	R	L	I	E	F	Y	K	H	E	S	C	G	Q	C	T	P	C	R	E	G	V	D	-	W	M	N	K	V	M	A	R	F	V	R	G	D	A	R	P	A	E	I	D	S	L	W	E	I	S	K	Q	I	E	G	H	T	I	C	A	L	G	D	G	A	A	W	P	V	Q	G	L	I	R	H	F	R	P	E	L	E	E	R	M	Q	R	F	A	Q	Q	H	Q	-	-	-	-	-	-	-	-

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R	V	S	M	V	D	A	M	W	N	L	T	R	F	Y	A	H	E	S	C	G	K	C	T	P	C	R	E	G	V	A	G	F	M	V	N	L	F	A	K	I	G	T	G	Q	G	E	E	K	D	V	E	N	L	E	A	L	L	P	L	I	E	G	R	S	F	C	P	L	A	D	A	A	V	W	P	V	K	G	S	L	R	H	F	K	D	Q	Y	L	A	L	A	R	E	K	-	-	-	R	P	V	P	R	P	S	L	W	R
S	T	D	I	V	K	A	I	A	R	L	I	E	F	Y	K	H	E	S	C	G	Q	C	T	P	C	R	E	G	V	D	-	W	M	N	K	V	M	A	R	F	V	R	G	D	A	R	P	A	E	I	D	S	L	W	E	I	S	K	Q	I	E	G	H	T	I	C	A	L	G	D	G	A	A	W	P	V	Q	G	L	I	R	H	F	R	P	E	L	E	E	R	M	Q	R	F	A	Q	Q	H	Q	-	-	-	-	-	-	-	-