PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d4w4ka-  (   8 )          pealtvaAt---------evrrirdraiqsdaqvapmttavrpp
d4w4kb-  (   2 )    hfeaypPevNSaniyagpgpdsmlaaArawrsldvemtavqrsfnrtlls
                           aaaaaaaa         aaaaaaaaaaaaaaaaaaaa      

                             60        70        80        90        100 
d4w4ka-  (  43 )    ----aadlvsekaAtflveyarkyrqtiaaaAvvleefAhalttgadkya
d4w4kb-  (  52 )    lmdawagpvvmqlmeaAkpfvrwLtdlcvqLseverqiheivrAyewAhh
                           aaaaaaaaa aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa  

                             110       120       130       140       150 
d4w4ka-  (  89 )    t                                                 
d4w4kb-  ( 102 )    dMvplaqIynNraerqilidnnalgqftaqiadldqeyddfwdeDGevmr
                                                                      

                             160       170 
d4w4ka-                                    
d4w4kb-  ( 152 )    dyrlrvsdAlskltpwkapppia

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d4w4ka- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4w4ka- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	PE	Mycobacterium tuberculosis [TaxId: 652616]		view
d4w4kb- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4w4kb- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	PPE41	PPE	Mycobacterium tuberculosis [TaxId: 1773]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term

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H	F	E	A	Y	P	P	E	V	N	S	A	N	I	Y	A	G	P	G	P	D	S	M	L	A	A	A	R	A	W	R	S	L	D	V	E	M	T	A	V	Q	R	S	F	N	R	T	L	L	S	L	M	D	A	W	A	G	P	V	V	M	Q	L	M	E	A	A	K	P	F	V	R	W	L	T	D	L	C	V	Q	L	S	E	V	E	R	Q	I	H	E	I	V	R	A	Y	E	W	A	H	H	D	M	V	P	L	A	Q	I	Y	N	N	R	A	E	R	Q	I	L	I	D	N	N	A	L	G	Q	F	T	A	Q	I	A	D	L	D	Q	E	Y	D	D	F	W	D	E	D	G	E	V	M	R	D	Y	R	L	R	V	S	D	A	L	S	K	L	T	P	W	K	A	P	P	P	I	A

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-	-	-	-	-	-	P	E	A	L	T	V	A	A	T	-	-	-	-	-	-	-	-	-	E	V	R	R	I	R	D	R	A	I	Q	S	D	A	Q	V	A	P	M	T	T	A	V	R	P	P	-	-	-	-	A	A	D	L	V	S	E	K	A	A	T	F	L	V	E	Y	A	R	K	Y	R	Q	T	I	A	A	A	A	V	V	L	E	E	F	A	H	A	L	T	T	G	A	D	K	Y	A	T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
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-	-	-	-	-	-	P	E	A	L	T	V	A	A	T	-	-	-	-	-	-	-	-	-	E	V	R	R	I	R	D	R	A	I	Q	S	D	A	Q	V	A	P	M	T	T	A	V	R	P	P	-	-	-	-	A	A	D	L	V	S	E	K	A	A	T	F	L	V	E	Y	A	R	K	Y	R	Q	T	I	A	A	A	A	V	V	L	E	E	F	A	H	A	L	T	T	G	A	D	K	Y	A	T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
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