PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2vs0a-  (   4 )    ikspeeirakSqsygqgSdqirqilsdltraqgeiaanwegqafsrfeeq
d3fava-  (  11 )          laqeagnferiSgdlktqidqvestagslqgqwrgaagtaaqaa
d3favb-  (  10 )         gieaaAsaiqgnvtsihslldegkqsltklaaawggsgseayqgv
d4j42a-  (   6 )     itpeeleriagnfknaageaqsqinrlegdinslegqwagatqakfrge
                          aaaaaaaaaaaaaaaaaaaaaaaaaaaa          aaaaaa

                             60        70        80  
d2vs0a-  (  55 )    fqqlspkvekfAqlleeikqqlnstAdavqe
d3fava-  (  55 )    vvrfqeaAnkqkqeLdeistnirqagvqy-s
d3favb-  (  55 )    qqkwdatatelnnalqnlArtiseagq    
d4j42a-  (  55 )    fiqskqamqqfipilegistdlkriadkf  
                    aaaaaaaaaaaaaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2vs0a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2vs0a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Staphylococcus aureus [TaxId: 1280]	view
d3fava- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3fava- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	ESAT-6 like	Mycobacterium tuberculosis [TaxId: 83332]	view
d3favb- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3favb- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	ESAT-6, EsxA	ESAT-6 like	Mycobacterium tuberculosis [TaxId: 1773]	view
d4j42a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4j42a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Bacillus anthracis [TaxId: 260799]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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I	K	S	P	E	E	I	R	A	K	S	Q	S	Y	G	Q	G	S	D	Q	I	R	Q	I	L	S	D	L	T	R	A	Q	G	E	I	A	A	N	W	E	G	Q	A	F	S	R	F	E	E	Q	F	Q	Q	L	S	P	K	V	E	K	F	A	Q	L	L	E	E	I	K	Q	Q	L	N	S	T	A	D	A	V	Q	E
-	-	-	-	-	-	L	A	Q	E	A	G	N	F	E	R	I	S	G	D	L	K	T	Q	I	D	Q	V	E	S	T	A	G	S	L	Q	G	Q	W	R	G	A	A	G	T	A	A	Q	A	A	V	V	R	F	Q	E	A	A	N	K	Q	K	Q	E	L	D	E	I	S	T	N	I	R	Q	A	G	V	Q	Y	-	S
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Member	Chain	UniProtKB	GO term

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I	K	S	P	E	E	I	R	A	K	S	Q	S	Y	G	Q	G	S	D	Q	I	R	Q	I	L	S	D	L	T	R	A	Q	G	E	I	A	A	N	W	E	G	Q	A	F	S	R	F	E	E	Q	F	Q	Q	L	S	P	K	V	E	K	F	A	Q	L	L	E	E	I	K	Q	Q	L	N	S	T	A	D	A	V	Q	E
-	-	-	-	-	-	L	A	Q	E	A	G	N	F	E	R	I	S	G	D	L	K	T	Q	I	D	Q	V	E	S	T	A	G	S	L	Q	G	Q	W	R	G	A	A	G	T	A	A	Q	A	A	V	V	R	F	Q	E	A	A	N	K	Q	K	Q	E	L	D	E	I	S	T	N	I	R	Q	A	G	V	Q	Y	-	S
-	-	-	-	-	G	I	E	A	A	A	S	A	I	Q	G	N	V	T	S	I	H	S	L	L	D	E	G	K	Q	S	L	T	K	L	A	A	A	W	G	G	S	G	S	E	A	Y	Q	G	V	Q	Q	K	W	D	A	T	A	T	E	L	N	N	A	L	Q	N	L	A	R	T	I	S	E	A	G	Q	-	-	-	-
-	I	T	P	E	E	L	E	R	I	A	G	N	F	K	N	A	A	G	E	A	Q	S	Q	I	N	R	L	E	G	D	I	N	S	L	E	G	Q	W	A	G	A	T	Q	A	K	F	R	G	E	F	I	Q	S	K	Q	A	M	Q	Q	F	I	P	I	L	E	G	I	S	T	D	L	K	R	I	A	D	K	F	-	-

									10										20										30										40										50										60										70										80
I	K	S	P	E	E	I	R	A	K	S	Q	S	Y	G	Q	G	S	D	Q	I	R	Q	I	L	S	D	L	T	R	A	Q	G	E	I	A	A	N	W	E	G	Q	A	F	S	R	F	E	E	Q	F	Q	Q	L	S	P	K	V	E	K	F	A	Q	L	L	E	E	I	K	Q	Q	L	N	S	T	A	D	A	V	Q	E
-	-	-	-	-	-	L	A	Q	E	A	G	N	F	E	R	I	S	G	D	L	K	T	Q	I	D	Q	V	E	S	T	A	G	S	L	Q	G	Q	W	R	G	A	A	G	T	A	A	Q	A	A	V	V	R	F	Q	E	A	A	N	K	Q	K	Q	E	L	D	E	I	S	T	N	I	R	Q	A	G	V	Q	Y	-	S
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I	K	S	P	E	E	I	R	A	K	S	Q	S	Y	G	Q	G	S	D	Q	I	R	Q	I	L	S	D	L	T	R	A	Q	G	E	I	A	A	N	W	E	G	Q	A	F	S	R	F	E	E	Q	F	Q	Q	L	S	P	K	V	E	K	F	A	Q	L	L	E	E	I	K	Q	Q	L	N	S	T	A	D	A	V	Q	E
-	-	-	-	-	-	L	A	Q	E	A	G	N	F	E	R	I	S	G	D	L	K	T	Q	I	D	Q	V	E	S	T	A	G	S	L	Q	G	Q	W	R	G	A	A	G	T	A	A	Q	A	A	V	V	R	F	Q	E	A	A	N	K	Q	K	Q	E	L	D	E	I	S	T	N	I	R	Q	A	G	V	Q	Y	-	S
-	-	-	-	-	G	I	E	A	A	A	S	A	I	Q	G	N	V	T	S	I	H	S	L	L	D	E	G	K	Q	S	L	T	K	L	A	A	A	W	G	G	S	G	S	E	A	Y	Q	G	V	Q	Q	K	W	D	A	T	A	T	E	L	N	N	A	L	Q	N	L	A	R	T	I	S	E	A	G	Q	-	-	-	-
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