PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2j9ua-  ( 148 )     fnakyvaeAtgnFitVmdaLklnynakdqLhplLaeLliSInrVtrd--
d2j9wa1  ( 123 )    gnlnrCiadIvslFitVMdkLrleiramdeIqpdLreLmeTMnrMshLpp
                       aaaaaaaaaaaaaaaaaaa     aaaaaaaaaaaaaaaaa      

                             60        70        80        90       
d2j9ua-  ( 195 )    dfenrskLidWivrInklsigdtLtetqireLlfdLelAyksFyall 
d2j9wa1  ( 173 )    dfeGrekVsqwlqkLssmsasdeLddsqvrqMlfdLesAynAFnrflh
                        aaaaaaaaaaaa         aaaaaaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2j9ua- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2j9ua- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	VPS28 C-terminal domain-like	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]		view
d2j9wa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2j9wa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	African clawed frog (Xenopus laevis) [TaxId: 8355]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	F	N	A	K	Y	V	A	E	A	T	G	N	F	I	T	V	M	D	A	L	K	L	N	Y	N	A	K	D	Q	L	H	P	L	L	A	E	L	L	I	S	I	N	R	V	T	R	D	-	-	D	F	E	N	R	S	K	L	I	D	W	I	V	R	I	N	K	L	S	I	G	D	T	L	T	E	T	Q	I	R	E	L	L	F	D	L	E	L	A	Y	K	S	F	Y	A	L	L	-
G	N	L	N	R	C	I	A	D	I	V	S	L	F	I	T	V	M	D	K	L	R	L	E	I	R	A	M	D	E	I	Q	P	D	L	R	E	L	M	E	T	M	N	R	M	S	H	L	P	P	D	F	E	G	R	E	K	V	S	Q	W	L	Q	K	L	S	S	M	S	A	S	D	E	L	D	D	S	Q	V	R	Q	M	L	F	D	L	E	S	A	Y	N	A	F	N	R	F	L	H

Member	Chain	UniProtKB	GO term

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G	N	L	N	R	C	I	A	D	I	V	S	L	F	I	T	V	M	D	K	L	R	L	E	I	R	A	M	D	E	I	Q	P	D	L	R	E	L	M	E	T	M	N	R	M	S	H	L	P	P	D	F	E	G	R	E	K	V	S	Q	W	L	Q	K	L	S	S	M	S	A	S	D	E	L	D	D	S	Q	V	R	Q	M	L	F	D	L	E	S	A	Y	N	A	F	N	R	F	L	H

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G	N	L	N	R	C	I	A	D	I	V	S	L	F	I	T	V	M	D	K	L	R	L	E	I	R	A	M	D	E	I	Q	P	D	L	R	E	L	M	E	T	M	N	R	M	S	H	L	P	P	D	F	E	G	R	E	K	V	S	Q	W	L	Q	K	L	S	S	M	S	A	S	D	E	L	D	D	S	Q	V	R	Q	M	L	F	D	L	E	S	A	Y	N	A	F	N	R	F	L	H

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-	F	N	A	K	Y	V	A	E	A	T	G	N	F	I	T	V	M	D	A	L	K	L	N	Y	N	A	K	D	Q	L	H	P	L	L	A	E	L	L	I	S	I	N	R	V	T	R	D	-	-	D	F	E	N	R	S	K	L	I	D	W	I	V	R	I	N	K	L	S	I	G	D	T	L	T	E	T	Q	I	R	E	L	L	F	D	L	E	L	A	Y	K	S	F	Y	A	L	L	-
G	N	L	N	R	C	I	A	D	I	V	S	L	F	I	T	V	M	D	K	L	R	L	E	I	R	A	M	D	E	I	Q	P	D	L	R	E	L	M	E	T	M	N	R	M	S	H	L	P	P	D	F	E	G	R	E	K	V	S	Q	W	L	Q	K	L	S	S	M	S	A	S	D	E	L	D	D	S	Q	V	R	Q	M	L	F	D	L	E	S	A	Y	N	A	F	N	R	F	L	H