PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2etsa1  (   2 )        ndlVesLiyevnn-qqnFenVksqqqdhdfyqtVkpytehId-iLn
d2huja1  (   2 )      ellirTeqLllQNekNwelYlsNr-eekpfdfy--dkpfvdeAkrCad
d2im8a-  (   2 )    lsqtlleTeq-ievAekGadrYqegknsnhsydffetIkpaveendelaa
                         a      aaaa   aaaaaa              aaaaaa     

                             60        70        80        90        100 
d2etsa1  (  49 )    -Iklh-rfIie---vpy-nsrkFelLianIeqLsveCHf-ktsrklFiek
d2huja1  (  50 )    dFlelAipwVnt-ePpylgelqLrqACdnVq-tAvsAfnGrsfykhFldh
d2im8a-  (  53 )    rwaegAlelikvrrPkyVhkeqIeavkdnfleLVlqSyvhhihkkrFkdI
                                       aaaaaaaaaaa             aaaaaaa

                             110       120 
d2etsa1  (  95 )    LksVqydLqnildgvt     
d2huja1  ( 100 )    YqsTkytLt-Vrdflkre--s
d2im8a-  ( 103 )    tesVlyTLhAVkdEIaredsr
                    aaaaaaaa   aaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2etsa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2etsa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein MW1337	YppE-like	Staphylococcus aureus [TaxId: 1280]	view
d2huja1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2huja1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein Lin2004	YppE-like	Listeria innocua [TaxId: 1642]	view
d2im8a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2im8a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein YppE	YppE-like	Bacillus subtilis [TaxId: 1423]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	N	D	L	V	E	S	L	I	Y	E	V	N	N	-	Q	Q	N	F	E	N	V	K	S	Q	Q	Q	D	H	D	F	Y	Q	T	V	K	P	Y	T	E	H	I	D	-	I	L	N	-	I	K	L	H	-	R	F	I	I	E	-	-	-	V	P	Y	-	N	S	R	K	F	E	L	L	I	A	N	I	E	Q	L	S	V	E	C	H	F	-	K	T	S	R	K	L	F	I	E	K	L	K	S	V	Q	Y	D	L	Q	N	I	L	D	G	V	T	-	-	-	-	-
-	-	E	L	L	I	R	T	E	Q	L	L	L	Q	N	E	K	N	W	E	L	Y	L	S	N	R	-	E	E	K	P	F	D	F	Y	-	-	D	K	P	F	V	D	E	A	K	R	C	A	D	D	F	L	E	L	A	I	P	W	V	N	T	-	E	P	P	Y	L	G	E	L	Q	L	R	Q	A	C	D	N	V	Q	-	T	A	V	S	A	F	N	G	R	S	F	Y	K	H	F	L	D	H	Y	Q	S	T	K	Y	T	L	T	-	V	R	D	F	L	K	R	E	-	-	S
L	S	Q	T	L	L	E	T	E	Q	-	I	E	V	A	E	K	G	A	D	R	Y	Q	E	G	K	N	S	N	H	S	Y	D	F	F	E	T	I	K	P	A	V	E	E	N	D	E	L	A	A	R	W	A	E	G	A	L	E	L	I	K	V	R	R	P	K	Y	V	H	K	E	Q	I	E	A	V	K	D	N	F	L	E	L	V	L	Q	S	Y	V	H	H	I	H	K	K	R	F	K	D	I	T	E	S	V	L	Y	T	L	H	A	V	K	D	E	I	A	R	E	D	S	R

Member	Chain	UniProtKB	GO term

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-	-	-	-	N	D	L	V	E	S	L	I	Y	E	V	N	N	-	Q	Q	N	F	E	N	V	K	S	Q	Q	Q	D	H	D	F	Y	Q	T	V	K	P	Y	T	E	H	I	D	-	I	L	N	-	I	K	L	H	-	R	F	I	I	E	-	-	-	V	P	Y	-	N	S	R	K	F	E	L	L	I	A	N	I	E	Q	L	S	V	E	C	H	F	-	K	T	S	R	K	L	F	I	E	K	L	K	S	V	Q	Y	D	L	Q	N	I	L	D	G	V	T	-	-	-	-	-
-	-	E	L	L	I	R	T	E	Q	L	L	L	Q	N	E	K	N	W	E	L	Y	L	S	N	R	-	E	E	K	P	F	D	F	Y	-	-	D	K	P	F	V	D	E	A	K	R	C	A	D	D	F	L	E	L	A	I	P	W	V	N	T	-	E	P	P	Y	L	G	E	L	Q	L	R	Q	A	C	D	N	V	Q	-	T	A	V	S	A	F	N	G	R	S	F	Y	K	H	F	L	D	H	Y	Q	S	T	K	Y	T	L	T	-	V	R	D	F	L	K	R	E	-	-	S
L	S	Q	T	L	L	E	T	E	Q	-	I	E	V	A	E	K	G	A	D	R	Y	Q	E	G	K	N	S	N	H	S	Y	D	F	F	E	T	I	K	P	A	V	E	E	N	D	E	L	A	A	R	W	A	E	G	A	L	E	L	I	K	V	R	R	P	K	Y	V	H	K	E	Q	I	E	A	V	K	D	N	F	L	E	L	V	L	Q	S	Y	V	H	H	I	H	K	K	R	F	K	D	I	T	E	S	V	L	Y	T	L	H	A	V	K	D	E	I	A	R	E	D	S	R

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-	-	-	-	N	D	L	V	E	S	L	I	Y	E	V	N	N	-	Q	Q	N	F	E	N	V	K	S	Q	Q	Q	D	H	D	F	Y	Q	T	V	K	P	Y	T	E	H	I	D	-	I	L	N	-	I	K	L	H	-	R	F	I	I	E	-	-	-	V	P	Y	-	N	S	R	K	F	E	L	L	I	A	N	I	E	Q	L	S	V	E	C	H	F	-	K	T	S	R	K	L	F	I	E	K	L	K	S	V	Q	Y	D	L	Q	N	I	L	D	G	V	T	-	-	-	-	-
-	-	E	L	L	I	R	T	E	Q	L	L	L	Q	N	E	K	N	W	E	L	Y	L	S	N	R	-	E	E	K	P	F	D	F	Y	-	-	D	K	P	F	V	D	E	A	K	R	C	A	D	D	F	L	E	L	A	I	P	W	V	N	T	-	E	P	P	Y	L	G	E	L	Q	L	R	Q	A	C	D	N	V	Q	-	T	A	V	S	A	F	N	G	R	S	F	Y	K	H	F	L	D	H	Y	Q	S	T	K	Y	T	L	T	-	V	R	D	F	L	K	R	E	-	-	S
L	S	Q	T	L	L	E	T	E	Q	-	I	E	V	A	E	K	G	A	D	R	Y	Q	E	G	K	N	S	N	H	S	Y	D	F	F	E	T	I	K	P	A	V	E	E	N	D	E	L	A	A	R	W	A	E	G	A	L	E	L	I	K	V	R	R	P	K	Y	V	H	K	E	Q	I	E	A	V	K	D	N	F	L	E	L	V	L	Q	S	Y	V	H	H	I	H	K	K	R	F	K	D	I	T	E	S	V	L	Y	T	L	H	A	V	K	D	E	I	A	R	E	D	S	R

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-	-	-	-	N	D	L	V	E	S	L	I	Y	E	V	N	N	-	Q	Q	N	F	E	N	V	K	S	Q	Q	Q	D	H	D	F	Y	Q	T	V	K	P	Y	T	E	H	I	D	-	I	L	N	-	I	K	L	H	-	R	F	I	I	E	-	-	-	V	P	Y	-	N	S	R	K	F	E	L	L	I	A	N	I	E	Q	L	S	V	E	C	H	F	-	K	T	S	R	K	L	F	I	E	K	L	K	S	V	Q	Y	D	L	Q	N	I	L	D	G	V	T	-	-	-	-	-
-	-	E	L	L	I	R	T	E	Q	L	L	L	Q	N	E	K	N	W	E	L	Y	L	S	N	R	-	E	E	K	P	F	D	F	Y	-	-	D	K	P	F	V	D	E	A	K	R	C	A	D	D	F	L	E	L	A	I	P	W	V	N	T	-	E	P	P	Y	L	G	E	L	Q	L	R	Q	A	C	D	N	V	Q	-	T	A	V	S	A	F	N	G	R	S	F	Y	K	H	F	L	D	H	Y	Q	S	T	K	Y	T	L	T	-	V	R	D	F	L	K	R	E	-	-	S
L	S	Q	T	L	L	E	T	E	Q	-	I	E	V	A	E	K	G	A	D	R	Y	Q	E	G	K	N	S	N	H	S	Y	D	F	F	E	T	I	K	P	A	V	E	E	N	D	E	L	A	A	R	W	A	E	G	A	L	E	L	I	K	V	R	R	P	K	Y	V	H	K	E	Q	I	E	A	V	K	D	N	F	L	E	L	V	L	Q	S	Y	V	H	H	I	H	K	K	R	F	K	D	I	T	E	S	V	L	Y	T	L	H	A	V	K	D	E	I	A	R	E	D	S	R