PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2ayda-  ( 293 )    srivvhtqtlfdivndgyrwrkygqksvkgSpyprsyyrCssp---gCpV
d5w3xd-  (1201 )                vegd-wtwrkygqkdilgsrfprgyyrCAykfthgCkA
                                       bbbbbbb        bbbbbb          

                             60        70        
d2ayda-  ( 340 )    kKhversshdtklLiTtyegkhdhdmppg
d5w3xd-  (1246 )    tKqvqrset---slaitylsehnhp-pt 
                    bbbbb         bbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2ayda- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2ayda- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Thale cress (Arabidopsis thaliana) [TaxId: 3702]		view
d5w3xd- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5w3xd- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Thale cress (Arabidopsis thaliana) [TaxId: 3702]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70
S	R	I	V	V	H	T	Q	T	L	F	D	I	V	N	D	G	Y	R	W	R	K	Y	G	Q	K	S	V	K	G	S	P	Y	P	R	S	Y	Y	R	C	S	S	P	-	-	-	G	C	P	V	K	K	H	V	E	R	S	S	H	D	T	K	L	L	I	T	T	Y	E	G	K	H	D	H	D	M	P	P	G
-	-	-	-	-	-	-	-	-	-	-	-	V	E	G	D	-	W	T	W	R	K	Y	G	Q	K	D	I	L	G	S	R	F	P	R	G	Y	Y	R	C	A	Y	K	F	T	H	G	C	K	A	T	K	Q	V	Q	R	S	E	T	-	-	-	S	L	A	I	T	Y	L	S	E	H	N	H	P	-	P	T	-

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70
S	R	I	V	V	H	T	Q	T	L	F	D	I	V	N	D	G	Y	R	W	R	K	Y	G	Q	K	S	V	K	G	S	P	Y	P	R	S	Y	Y	R	C	S	S	P	-	-	-	G	C	P	V	K	K	H	V	E	R	S	S	H	D	T	K	L	L	I	T	T	Y	E	G	K	H	D	H	D	M	P	P	G
-	-	-	-	-	-	-	-	-	-	-	-	V	E	G	D	-	W	T	W	R	K	Y	G	Q	K	D	I	L	G	S	R	F	P	R	G	Y	Y	R	C	A	Y	K	F	T	H	G	C	K	A	T	K	Q	V	Q	R	S	E	T	-	-	-	S	L	A	I	T	Y	L	S	E	H	N	H	P	-	P	T	-

									10										20										30										40										50										60										70
S	R	I	V	V	H	T	Q	T	L	F	D	I	V	N	D	G	Y	R	W	R	K	Y	G	Q	K	S	V	K	G	S	P	Y	P	R	S	Y	Y	R	C	S	S	P	-	-	-	G	C	P	V	K	K	H	V	E	R	S	S	H	D	T	K	L	L	I	T	T	Y	E	G	K	H	D	H	D	M	P	P	G
-	-	-	-	-	-	-	-	-	-	-	-	V	E	G	D	-	W	T	W	R	K	Y	G	Q	K	D	I	L	G	S	R	F	P	R	G	Y	Y	R	C	A	Y	K	F	T	H	G	C	K	A	T	K	Q	V	Q	R	S	E	T	-	-	-	S	L	A	I	T	Y	L	S	E	H	N	H	P	-	P	T	-

									10										20										30										40										50										60										70
S	R	I	V	V	H	T	Q	T	L	F	D	I	V	N	D	G	Y	R	W	R	K	Y	G	Q	K	S	V	K	G	S	P	Y	P	R	S	Y	Y	R	C	S	S	P	-	-	-	G	C	P	V	K	K	H	V	E	R	S	S	H	D	T	K	L	L	I	T	T	Y	E	G	K	H	D	H	D	M	P	P	G
-	-	-	-	-	-	-	-	-	-	-	-	V	E	G	D	-	W	T	W	R	K	Y	G	Q	K	D	I	L	G	S	R	F	P	R	G	Y	Y	R	C	A	Y	K	F	T	H	G	C	K	A	T	K	Q	V	Q	R	S	E	T	-	-	-	S	L	A	I	T	Y	L	S	E	H	N	H	P	-	P	T	-