Motif    Start   End  Length   Motif
Motif1    48     50     3      [C][PK][VA]
Motif2    52     55     4      [K][HQ][V][EQ]


Motif marked on the alignment

                                                         *** ****     
d2ayda  : SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSP---GCPVKKHVERSSHD
d5w3xd  : ------------VEGD-WTWRKYGQKDILGSRFPRGYYRCAYKFTHGCKATKQVQRSET-


                                                                      
d2ayda  : TKLLITTYEGKHDHDMPPG
d5w3xd  : --SLAITYLSEHNHP-PT-