PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d4im9a-  (  12 )         tprdVIAlLIqnpsyAelVpdLasVrhLipgLdtFseVLekCrqy
d6cbra1  ( 443 )    vplrttmriLIGLLVqNpeLAtlVppLeldenklpgLglFreLvntClsq
                            aaaaaaaa 333333             aaaaaaaaaaaaa 

                             60        70        80        90        100 
d4im9a-  (  59 )    phittgqLlehwrdsknetlLsrLasweiplvednqeelFldsLdkiLaq
d6cbra1  ( 496 )    pglttgqLlehyrgtnnaatLekLsmwddiadkniAeqtFtdSlnhMfds
                        aaaaa        aaaaaaa           aaaaaaaaaaaaaaa

                             110       120       130    
d4im9a-  ( 109 )    CvekqienlqakersvgLsteekreLqdlilkglk 
d6cbra1  ( 546 )    llelrqeeLiarerthgLsneerlelwtlnqelakk
                    aaaaaaaaaaaaaaa    aaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d4im9a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4im9a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Vibrio cholerae [TaxId: 345073]		view
d6cbra1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6cbra1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	DNA primase DnaG, C-terminal domain	Escherichia coli [TaxId: 83333]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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V	P	L	R	T	T	M	R	I	L	I	G	L	L	V	Q	N	P	E	L	A	T	L	V	P	P	L	E	L	D	E	N	K	L	P	G	L	G	L	F	R	E	L	V	N	T	C	L	S	Q	P	G	L	T	T	G	Q	L	L	E	H	Y	R	G	T	N	N	A	A	T	L	E	K	L	S	M	W	D	D	I	A	D	K	N	I	A	E	Q	T	F	T	D	S	L	N	H	M	F	D	S	L	L	E	L	R	Q	E	E	L	I	A	R	E	R	T	H	G	L	S	N	E	E	R	L	E	L	W	T	L	N	Q	E	L	A	K	K

Member	Chain	UniProtKB	GO term

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V	P	L	R	T	T	M	R	I	L	I	G	L	L	V	Q	N	P	E	L	A	T	L	V	P	P	L	E	L	D	E	N	K	L	P	G	L	G	L	F	R	E	L	V	N	T	C	L	S	Q	P	G	L	T	T	G	Q	L	L	E	H	Y	R	G	T	N	N	A	A	T	L	E	K	L	S	M	W	D	D	I	A	D	K	N	I	A	E	Q	T	F	T	D	S	L	N	H	M	F	D	S	L	L	E	L	R	Q	E	E	L	I	A	R	E	R	T	H	G	L	S	N	E	E	R	L	E	L	W	T	L	N	Q	E	L	A	K	K

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V	P	L	R	T	T	M	R	I	L	I	G	L	L	V	Q	N	P	E	L	A	T	L	V	P	P	L	E	L	D	E	N	K	L	P	G	L	G	L	F	R	E	L	V	N	T	C	L	S	Q	P	G	L	T	T	G	Q	L	L	E	H	Y	R	G	T	N	N	A	A	T	L	E	K	L	S	M	W	D	D	I	A	D	K	N	I	A	E	Q	T	F	T	D	S	L	N	H	M	F	D	S	L	L	E	L	R	Q	E	E	L	I	A	R	E	R	T	H	G	L	S	N	E	E	R	L	E	L	W	T	L	N	Q	E	L	A	K	K

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V	P	L	R	T	T	M	R	I	L	I	G	L	L	V	Q	N	P	E	L	A	T	L	V	P	P	L	E	L	D	E	N	K	L	P	G	L	G	L	F	R	E	L	V	N	T	C	L	S	Q	P	G	L	T	T	G	Q	L	L	E	H	Y	R	G	T	N	N	A	A	T	L	E	K	L	S	M	W	D	D	I	A	D	K	N	I	A	E	Q	T	F	T	D	S	L	N	H	M	F	D	S	L	L	E	L	R	Q	E	E	L	I	A	R	E	R	T	H	G	L	S	N	E	E	R	L	E	L	W	T	L	N	Q	E	L	A	K	K