PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1r0da-  ( 773 )    dvrqeeLgavVdkeaaTsaaIedavrriednqArhassgvkleVNerIln
d1sj8a2  ( 658 )                                         sdTdphfqdvlmq
d1u89a1  ( 755 )                                       qaatedgqllrgvGa
                                                                   aaa

                             60        70        80        90        100 
d1r0da-  ( 826 )    SCtdL-kaIrlLvttStsLqkeiVesgrgaatqqefYaknsrWTegLisA
d1sj8a2  ( 671 )    lAnaVasaAaaLvlkAksvAqrTe---------------dsglqtqViaa
d1u89a1  ( 770 )    aAtavtqAlnellqhvkahAtgagpag----------------------r
                    aaaa   aaaaaaaaa                                  

                             110       120       130       140       150 
d1r0da-  ( 876 )    skaVgwgAtqLveAAdkVVlht---gkyeeLivcSheIaasTaqLvaaSk
d1sj8a2  ( 706 )    atqCalSTsqLvacTkvvAptisspvcqeqlveAGrlVakaVegCvsasq
d1u89a1  ( 798 )    ydqatdtiltvtenifssmg------dAGeMvrqArilaqatsdlvnaik
                     aaaaaaaaaaaaaaaa          aaaaaaaaaaaaaaaaaaaaaaa

                             160       170       180       190      
d1r0da-  ( 923 )    vkA--nkhsphlsrLqeCsrtVnerAanVvasTksgqeqiedrd---t
d1sj8a2  ( 756 )    aAt--e--dgqllrgvgAaatAvtqalnEll                 
d1u89a1  ( 842 )    aDAegEsdlenSrkllsaAkiladAtakMveaAkgAaahpdseeqqqr
                               aaaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1r0da- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1r0da- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Huntingtin interacting protein 12	I/LWEQ domain	Human (Homo sapiens) [TaxId: 9606]	view
d1sj8a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1sj8a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Talin 1	I/LWEQ domain	Mouse (Mus musculus) [TaxId: 10090]	view
d1u89a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1u89a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Talin 1	I/LWEQ domain	Mouse (Mus musculus) [TaxId: 10090]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1r0da_	A	O75146	GO:0003779
d1r0da_	A	O75146	GO:0006897
d1r0da_	A	O75146	GO:0030276
d1sj8a2	A	P26039	GO:0001726
d1sj8a2	A	P26039	GO:0003779
d1sj8a2	A	P26039	GO:0005200
d1sj8a2	A	P26039	GO:0005925
d1u89a1	A	P26039	GO:0003779

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