Superfamily : 103511 [ Chlorophyll a-b binding protein ]
Class : Membrane and cell surface proteins and peptides
Fold : Chlorophyll a-b binding protein
# of Members : 4
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d6yac3-  (  55 )          rplw---faskqSlsyldgslpgdyGfdplGlsdpegtggfiep
d7dkz1-  (  35 )           Adwmpgq---prPsyldgsapGdfGfdplrlGev-----penl
d7dz79-  (  28 )          rpTwlpgl---nppahlkgalaGdnGfdplglgqd-----egrl
d7dz7u-  (  39 )    efygpnRakwlgpySenatpayLtGefpGdyGwdtaglsad-----petf
                                                                   aaa

                             60        70        80        90        100 
d6yac3-  (  96 )    rwlaygevingrfamlgavgaiapeylGkvglipqetalAwfqtgv--ip
d7dkz1-  (  70 )    erfkeseLihCrwamlavpgilvpealg---------lgnwvkaqewaal
d7dz79-  (  64 )    kwyaeaektnGrwammavagIlgqell---------gvpawweagakeyd
d7dz7u-  (  84 )    kryreleLihArwamlgalgcitpellaksg--tqfgeavwfkagaqIf-
                    aaaaaaaaaaaaaaaaaaaaaaaaaa                        

                             110       120       130       140       150 
d6yac3-  ( 144 )    pagtyn--------ywadnytlfvlemalmgfaehrrfqdwakpgsmgkq
d7dkz1-  ( 111 )    pggqatylgnp--vpwGtlptilvieflsiafvehqrsm----ek-----
d7dz79-  ( 106 )    ----------------ipaqaltpiefivmgfleikryqGfkqtg-----
d7dz7u-  ( 132 )    -egGldylgnpslvhaqnivatlavqvl-mglvegyrvnggpage-----
                                      aaaaaaaaaaaaaaaaaaaa            

                             160       170       180       190       200 
d6yac3-  ( 186 )    yflglekGfggsgnpaypggpffnplgfGd-ekslkelklkevknGrlam
d7dkz1-  ( 150 )    ----------dpekkkypgg-afdplGyskdp--fheykikeVknGrlal
d7dz79-  ( 135 )    ----------tsGfinsfp---fdpagm-----nspsmatkeVknGrlam
d7dz7u-  ( 176 )    ----------gl-dplypge-sfdplgladdpdtfaelkVkeIknGrlam
                                                       aaaaaaaaaaaaaaa

                             210       220       230       240   
d6yac3-  ( 236 )    lailgyfiqGlvt-gvGPyqnlldhvadp-vnnnvltslkfh   
d7dkz1-  ( 189 )    lafvgIcvqqsaypgtGPlenlathladpwhntignvlp-----a
d7dz79-  ( 167 )    vafigfcvqAlat-rtqPiegltahladpfgknityylthlpetl
d7dz7u-  ( 214 )    fsmfgffvqaivt-gkGPiqnlddhlsnptvnnafafatkftpsa
                    aaaaaaaaaaaa     aaaaaaaaaa
 

 

Domain IDNameFamilySourceDomainSTRING-DB
automated matchesautomated matchesPea (Pisum sativum) [TaxId: 3888]view
automated matchesautomated matchesPea (Pisum sativum) [TaxId: 3888]view
automated matchesautomated matchesGreen alga (Chlamydomonas reinhardtii) [TaxId: 3055]view
automated matchesChlorophyll a-b binding proteinGreen alga (Chlamydomonas reinhardtii) [TaxId: 3055]view

 

No outliers

FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240
- - - - - - R P L W - - - F A S K Q S L S Y L D G S L P G D Y G F D P L G L S D P E G T G G F I E P R W L A Y G E V I N G R F A M L G A V G A I A P E Y L G K V G L I P Q E T A L A W F Q T G V - - I P P A G T Y N - - - - - - - - Y W A D N Y T L F V L E M A L M G F A E H R R F Q D W A K P G S M G K Q Y F L G L E K G F G G S G N P A Y P G G P F F N P L G F G D - E K S L K E L K L K E V K N G R L A M L A I L G Y F I Q G L V T - G V G P Y Q N L L D H V A D P - V N N N V L T S L K F H - - -
- - - - - - - A D W M P G Q - - - P R P S Y L D G S A P G D F G F D P L R L G E V - - - - - P E N L E R F K E S E L I H C R W A M L A V P G I L V P E A L G - - - - - - - - - L G N W V K A Q E W A A L P G G Q A T Y L G N P - - V P W G T L P T I L V I E F L S I A F V E H Q R S M - - - - E K - - - - - - - - - - - - - - - D P E K K K Y P G G - A F D P L G Y S K D P - - F H E Y K I K E V K N G R L A L L A F V G I C V Q Q S A Y P G T G P L E N L A T H L A D P W H N T I G N V L P - - - - - A
- - - - - - R P T W L P G L - - - N P P A H L K G A L A G D N G F D P L G L G Q D - - - - - E G R L K W Y A E A E K T N G R W A M M A V A G I L G Q E L L - - - - - - - - - G V P A W W E A G A K E Y D - - - - - - - - - - - - - - - - I P A Q A L T P I E F I V M G F L E I K R Y Q G F K Q T G - - - - - - - - - - - - - - - T S G F I N S F P - - - F D P A G M - - - - - N S P S M A T K E V K N G R L A M V A F I G F C V Q A L A T - R T Q P I E G L T A H L A D P F G K N I T Y Y L T H L P E T L
E F Y G P N R A K W L G P Y S E N A T P A Y L T G E F P G D Y G W D T A G L S A D - - - - - P E T F K R Y R E L E L I H A R W A M L G A L G C I T P E L L A K S G - - T Q F G E A V W F K A G A Q I F - - E G G L D Y L G N P S L V H A Q N I V A T L A V Q V L - M G L V E G Y R V N G G P A G E - - - - - - - - - - - - - - - G L - D P L Y P G E - S F D P L G L A D D P D T F A E L K V K E I K N G R L A M F S M F G F F V Q A I V T - G K G P I Q N L D D H L S N P T V N N A F A F A T K F T P S A

 

 

 

 

 

Member Chain UniProtKB GO term
 
Contact: Prof. R. Sowdhamini - mini@ncbs.res.in