PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1okca-  (   3 )    qalsflkdflagGvaaaisktavApieRVKLLlQVqhASkqIs-------
d2lcka-  (  13 )        mtvkflgagtaaciadlitfpldtakvrlq-----iqgesqglvrt
                           aaaaaaaaaaaaaa  aaaaaaaaa                  

                             60        70        80        90        100 
d1okca-  (  46 )    -aekqYkgiidCvvrIpkeQgflsfwrGnlAnviryfptqalnfafkdky
d2lcka-  (  54 )    aasaqyrgvlgtiltmvrtegprslynglvaglqrqmsfasvriglydsv
                            aaaaaaaaaaa          aaaaaaaaaaaaa   aaaaa

                             110       120       130       140       150 
d1okca-  (  95 )    kqiflggVdrhkqfwryfagnlaSgGaagatslcfVYpldFARTRLAADv
d2lcka-  ( 104 )    kqfytkg--seha---gigsrllaGsttGalavavaqptdvvkvrfqaqa
                    aaaa             aaaaaaaaaaaaaaaaaa  aaaaaaaaaaa  

                             160       170       180       190       200 
d1okca-  ( 145 )    gkg----aaqreFtglgnCitkIfksdg-lGLyqGfnVsvqgiiiyraay
d2lcka-  ( 149 )    ragggrr-----yqstveayktiareegirglwkgtspnvarnaivncae
                                   aaaaaaaaaaaa        aaaaaaaaaaaaaaa

                             210       220       230       240       250 
d1okca-  ( 191 )    fgvydtakgmlpdpnh----iivswmiaqtVtavAglvsYpfdTVrrRMM
d2lcka-  ( 194 )    lvtydlikdtllkanlmtddlpchftsafgagfcttviaspvdvvktr-y
                    aaaaaaaaa           aaaaaaaaaaaaaaaaaaaaaaaaaaa   

                             260       270       280       290       300 
d1okca-  ( 239 )    MQSgrkgadimYtgtvdCwrkIakdegp-af---fkGawSnvlrgmggaf
d2lcka-  ( 243 )    mnsal----gqyhsaghcaltmlrkegprafykgfmpsflrlgswnvvmf
                                   aaaaaaaaa             aaaaaaaaaaaaa

                             310       320 
d1okca-  ( 286 )    vlvlyde              
d2lcka-  ( 289 )    vtyeqlkralmaayqsreapf
                    aaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1okca- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1okca- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	ADP,ATP carrier protein	Mitochondrial carrier	Cow (Bos taurus), heart isoform t1 [TaxId: 9913]		view
d2lcka- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2lcka- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Mouse (Mus musculus) [TaxId: 10090]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1okca_	A	P02722	GO:0005471
d1okca_	A	P02722	GO:0005739
d1okca_	A	P02722	GO:0005743
d1okca_	A	P02722	GO:0005757
d1okca_	A	P02722	GO:0015297
d1okca_	A	P02722	GO:0015866
d1okca_	A	P02722	GO:0017077
d1okca_	A	P02722	GO:0031966
d1okca_	A	P02722	GO:0046902
d1okca_	A	P02722	GO:0055085
d1okca_	A	P02722	GO:0140021
d1okca_	A	P02722	GO:1901029
d1okca_	A	P02722	GO:1901526
d1okca_	A	P02722	GO:1902600
d1okca_	A	P02722	GO:1990544
d1okca_	A	P02722	GO:1990845

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Q	A	L	S	F	L	K	D	F	L	A	G	G	V	A	A	A	I	S	K	T	A	V	A	P	I	E	R	V	K	L	L	L	Q	V	Q	H	A	S	K	Q	I	S	-	-	-	-	-	-	-	-	A	E	K	Q	Y	K	G	I	I	D	C	V	V	R	I	P	K	E	Q	G	F	L	S	F	W	R	G	N	L	A	N	V	I	R	Y	F	P	T	Q	A	L	N	F	A	F	K	D	K	Y	K	Q	I	F	L	G	G	V	D	R	H	K	Q	F	W	R	Y	F	A	G	N	L	A	S	G	G	A	A	G	A	T	S	L	C	F	V	Y	P	L	D	F	A	R	T	R	L	A	A	D	V	G	K	G	-	-	-	-	A	A	Q	R	E	F	T	G	L	G	N	C	I	T	K	I	F	K	S	D	G	-	L	G	L	Y	Q	G	F	N	V	S	V	Q	G	I	I	I	Y	R	A	A	Y	F	G	V	Y	D	T	A	K	G	M	L	P	D	P	N	H	-	-	-	-	I	I	V	S	W	M	I	A	Q	T	V	T	A	V	A	G	L	V	S	Y	P	F	D	T	V	R	R	R	M	M	M	Q	S	G	R	K	G	A	D	I	M	Y	T	G	T	V	D	C	W	R	K	I	A	K	D	E	G	P	-	A	F	-	-	-	F	K	G	A	W	S	N	V	L	R	G	M	G	G	A	F	V	L	V	L	Y	D	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-
-	-	-	-	M	T	V	K	F	L	G	A	G	T	A	A	C	I	A	D	L	I	T	F	P	L	D	T	A	K	V	R	L	Q	-	-	-	-	-	I	Q	G	E	S	Q	G	L	V	R	T	A	A	S	A	Q	Y	R	G	V	L	G	T	I	L	T	M	V	R	T	E	G	P	R	S	L	Y	N	G	L	V	A	G	L	Q	R	Q	M	S	F	A	S	V	R	I	G	L	Y	D	S	V	K	Q	F	Y	T	K	G	-	-	S	E	H	A	-	-	-	G	I	G	S	R	L	L	A	G	S	T	T	G	A	L	A	V	A	V	A	Q	P	T	D	V	V	K	V	R	F	Q	A	Q	A	R	A	G	G	G	R	R	-	-	-	-	-	Y	Q	S	T	V	E	A	Y	K	T	I	A	R	E	E	G	I	R	G	L	W	K	G	T	S	P	N	V	A	R	N	A	I	V	N	C	A	E	L	V	T	Y	D	L	I	K	D	T	L	L	K	A	N	L	M	T	D	D	L	P	C	H	F	T	S	A	F	G	A	G	F	C	T	T	V	I	A	S	P	V	D	V	V	K	T	R	-	Y	M	N	S	A	L	-	-	-	-	G	Q	Y	H	S	A	G	H	C	A	L	T	M	L	R	K	E	G	P	R	A	F	Y	K	G	F	M	P	S	F	L	R	L	G	S	W	N	V	V	M	F	V	T	Y	E	Q	L	K	R	A	L	M	A	A	Y	Q	S	R	E	A	P	F

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