PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1v9ma-  (   5 )             fayLNarVrvrrgtlLkesfFqeALdls-fadFlrlLsetv
d6m0rb-  (   1 )    megvyfnidngfiEgvvrgyrngllsnnqYinltqcdtledlklqlsstd
                              aaaaaaaaaaa     aaaaaaa     aaaaaaaa    

                             60        70        80        90        100 
d1v9ma-  (  45 )    YGgeL-agq----glpdVdrAvlrTQaklVGdLPrlvtgeAreaVrlLLl
d6m0rb-  (  51 )    YgnflssvsseslttsliqeyAssklyheFnyirdqSsgstrkFMdyity
                                  aaaaaaaaaaaaaaa   aaaa   aaaaaaaa  a

                             110       120       130       140       150 
d1v9ma-  (  90 )    rNDLhNLQaLLrakatgrpfeeVl-LLpGtLreevWrqAyeaqdpagMA-
d6m0rb-  ( 101 )    gymidnvAlMitGtihdrdkgeilqrChplGwfdtlptlsvatdleslye
                    aaaaaaaaaaaaaaa                             aaaaa 

                             160       170       180       190       200 
d1v9ma-  ( 138 )    qvLavpgHpLAraLraVlr---etq--dlarVEAlLAkrfFedvak----
d6m0rb-  ( 151 )    tvlvd--tplapYFknCfdtaeelddmnieiirnklykaYledFynfvte
                    a                           aaaaaaaaaaaaaaaaa     

                             210       220       230       240       250 
d1v9ma-  ( 186 )    -------palrdYlaLEvDAENLrTAfkLqgs-gla---pdaFfLkgGrf
d6m0rb-  ( 199 )    eipepAkecMqtllgFeADrrSiniAlnslqssdidpdlksdllPniGk-
                            aaaaaaaaaaaaaaaaaaaa                      

                             260       270       280       290       300 
d1v9ma-  ( 225 )    VdrvrFarLMe-----gdyaVLdeLsgtpFsgLsgvrdlkaLergLrçvl
d6m0rb-  ( 248 )    lyplatfhlaqAqdfegvraAlanvy--eYrgfletg---nledhFyqlE
                       aaaaaaa                               aaaaaaaaa

                             310       320       330       340       350 
d1v9ma-  ( 270 )    lkeAkkgvqdplgvGLVLAYVKeRewEAVrLrlLArrayfglpraqveee
d6m0rb-  ( 293 )    MelCrdAFtqqfAiStvWAWMkSkeqEvrnitwiAeCiaqn-qrerinny
                    aaaa           aaaaaaaaaaaaaaaaaaaaaaaa           

                        
d1v9ma-  ( 320 )    Vvçp
d6m0rb-  ( 342 )    isvy

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1v9ma- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1v9ma- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	V-type ATP synthase subunit C	V-type ATP synthase subunit C	Thermus thermophilus [TaxId: 274]		view
d6m0rb- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6m0rb- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	V-type proton ATPase subunit d	V-type ATP synthase subunit C	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1v9ma_	A	P74902	GO:0005524
d1v9ma_	A	P74902	GO:0006754
d1v9ma_	A	P74902	GO:0033179
d1v9ma_	A	P74902	GO:0042777
d1v9ma_	A	P74902	GO:0046933
d1v9ma_	A	P74902	GO:0046961
d1v9ma_	A	P74902	GO:1902600

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M	E	G	V	Y	F	N	I	D	N	G	F	I	E	G	V	V	R	G	Y	R	N	G	L	L	S	N	N	Q	Y	I	N	L	T	Q	C	D	T	L	E	D	L	K	L	Q	L	S	S	T	D	Y	G	N	F	L	S	S	V	S	S	E	S	L	T	T	S	L	I	Q	E	Y	A	S	S	K	L	Y	H	E	F	N	Y	I	R	D	Q	S	S	G	S	T	R	K	F	M	D	Y	I	T	Y	G	Y	M	I	D	N	V	A	L	M	I	T	G	T	I	H	D	R	D	K	G	E	I	L	Q	R	C	H	P	L	G	W	F	D	T	L	P	T	L	S	V	A	T	D	L	E	S	L	Y	E	T	V	L	V	D	-	-	T	P	L	A	P	Y	F	K	N	C	F	D	T	A	E	E	L	D	D	M	N	I	E	I	I	R	N	K	L	Y	K	A	Y	L	E	D	F	Y	N	F	V	T	E	E	I	P	E	P	A	K	E	C	M	Q	T	L	L	G	F	E	A	D	R	R	S	I	N	I	A	L	N	S	L	Q	S	S	D	I	D	P	D	L	K	S	D	L	L	P	N	I	G	K	-	L	Y	P	L	A	T	F	H	L	A	Q	A	Q	D	F	E	G	V	R	A	A	L	A	N	V	Y	-	-	E	Y	R	G	F	L	E	T	G	-	-	-	N	L	E	D	H	F	Y	Q	L	E	M	E	L	C	R	D	A	F	T	Q	Q	F	A	I	S	T	V	W	A	W	M	K	S	K	E	Q	E	V	R	N	I	T	W	I	A	E	C	I	A	Q	N	-	Q	R	E	R	I	N	N	Y	I	S	V	Y

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