PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

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d1rh5b-  (  11 )    lkefieecrrvwlvlkkptkdeylavakvtalgisllgiigyiihvpaty
d3dind-  (  10 )    e-viaeakkiswpsrkellt-sfgvvlvilavtsvyffvldfifsgvvsa
                      aaaaaaaaaaa         aaaaaaaaaaaaaaaaaaaaaaaaaaaa

                            
d1rh5b-  (  61 )    ikgilk  
d3dind-  (  58 )    ifkalgig
                    aaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1rh5b- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1rh5b- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Preprotein translocase SecE subunit	Preprotein translocase SecE subunit	Methanococcus jannaschii [TaxId: 2190]		view
d3dind- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3dind- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Preprotein translocase SecE subunit	Preprotein translocase SecE subunit	Thermotoga maritima MSB8 [TaxId: 243274]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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L	K	E	F	I	E	E	C	R	R	V	W	L	V	L	K	K	P	T	K	D	E	Y	L	A	V	A	K	V	T	A	L	G	I	S	L	L	G	I	I	G	Y	I	I	H	V	P	A	T	Y	I	K	G	I	L	K	-	-
E	-	V	I	A	E	A	K	K	I	S	W	P	S	R	K	E	L	L	T	-	S	F	G	V	V	L	V	I	L	A	V	T	S	V	Y	F	F	V	L	D	F	I	F	S	G	V	V	S	A	I	F	K	A	L	G	I	G

Member	Chain	UniProtKB	GO term
d1rh5b_	B	Q60175	GO:0005886
d1rh5b_	B	Q60175	GO:0006605
d1rh5b_	B	Q60175	GO:0008320
d1rh5b_	B	Q60175	GO:0015031
d1rh5b_	B	Q60175	GO:0016020
d1rh5b_	B	Q60175	GO:0065002
d1rh5b_	B	Q60175	GO:0006886
d1rh5b_	B	Q60175	GO:0009306
d1rh5b_	B	Q57817	GO:0005886
d1rh5b_	B	Q57817	GO:0006605
d1rh5b_	B	Q57817	GO:0008320
d1rh5b_	B	Q57817	GO:0015031
d1rh5b_	B	Q57817	GO:0016020
d1rh5b_	B	Q57817	GO:0065002
d1rh5b_	B	Q57817	GO:0006886
d1rh5b_	B	Q57817	GO:0009306
d1rh5b_	B	P60460	GO:0005886
d1rh5b_	B	P60460	GO:0006605
d1rh5b_	B	P60460	GO:0008320
d1rh5b_	B	P60460	GO:0015031
d1rh5b_	B	P60460	GO:0016020
d1rh5b_	B	P60460	GO:0065002
d1rh5b_	B	P60460	GO:0006886
d1rh5b_	B	P60460	GO:0009306
d1rh5b_	B	Q60175	GO:0005886
d1rh5b_	B	Q60175	GO:0006605
d1rh5b_	B	Q60175	GO:0008320
d1rh5b_	B	Q60175	GO:0015031
d1rh5b_	B	Q60175	GO:0016020
d1rh5b_	B	Q60175	GO:0065002
d1rh5b_	B	Q60175	GO:0006886
d1rh5b_	B	Q60175	GO:0009306
d1rh5b_	B	Q57817	GO:0005886
d1rh5b_	B	Q57817	GO:0006605
d1rh5b_	B	Q57817	GO:0008320
d1rh5b_	B	Q57817	GO:0015031
d1rh5b_	B	Q57817	GO:0016020
d1rh5b_	B	Q57817	GO:0065002
d1rh5b_	B	Q57817	GO:0006886
d1rh5b_	B	Q57817	GO:0009306
d1rh5b_	B	P60460	GO:0005886
d1rh5b_	B	P60460	GO:0006605
d1rh5b_	B	P60460	GO:0008320
d1rh5b_	B	P60460	GO:0015031
d1rh5b_	B	P60460	GO:0016020
d1rh5b_	B	P60460	GO:0065002
d1rh5b_	B	P60460	GO:0006886
d1rh5b_	B	P60460	GO:0009306
d1rh5b_	B	Q60175	GO:0005886
d1rh5b_	B	Q60175	GO:0006605
d1rh5b_	B	Q60175	GO:0008320
d1rh5b_	B	Q60175	GO:0015031
d1rh5b_	B	Q60175	GO:0016020
d1rh5b_	B	Q60175	GO:0065002
d1rh5b_	B	Q60175	GO:0006886
d1rh5b_	B	Q60175	GO:0009306
d1rh5b_	B	Q57817	GO:0005886
d1rh5b_	B	Q57817	GO:0006605
d1rh5b_	B	Q57817	GO:0008320
d1rh5b_	B	Q57817	GO:0015031
d1rh5b_	B	Q57817	GO:0016020
d1rh5b_	B	Q57817	GO:0065002
d1rh5b_	B	Q57817	GO:0006886
d1rh5b_	B	Q57817	GO:0009306
d1rh5b_	B	P60460	GO:0005886
d1rh5b_	B	P60460	GO:0006605
d1rh5b_	B	P60460	GO:0008320
d1rh5b_	B	P60460	GO:0015031
d1rh5b_	B	P60460	GO:0016020
d1rh5b_	B	P60460	GO:0065002
d1rh5b_	B	P60460	GO:0006886
d1rh5b_	B	P60460	GO:0009306

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L	K	E	F	I	E	E	C	R	R	V	W	L	V	L	K	K	P	T	K	D	E	Y	L	A	V	A	K	V	T	A	L	G	I	S	L	L	G	I	I	G	Y	I	I	H	V	P	A	T	Y	I	K	G	I	L	K	-	-
E	-	V	I	A	E	A	K	K	I	S	W	P	S	R	K	E	L	L	T	-	S	F	G	V	V	L	V	I	L	A	V	T	S	V	Y	F	F	V	L	D	F	I	F	S	G	V	V	S	A	I	F	K	A	L	G	I	G

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L	K	E	F	I	E	E	C	R	R	V	W	L	V	L	K	K	P	T	K	D	E	Y	L	A	V	A	K	V	T	A	L	G	I	S	L	L	G	I	I	G	Y	I	I	H	V	P	A	T	Y	I	K	G	I	L	K	-	-
E	-	V	I	A	E	A	K	K	I	S	W	P	S	R	K	E	L	L	T	-	S	F	G	V	V	L	V	I	L	A	V	T	S	V	Y	F	F	V	L	D	F	I	F	S	G	V	V	S	A	I	F	K	A	L	G	I	G

									10										20										30										40										50
L	K	E	F	I	E	E	C	R	R	V	W	L	V	L	K	K	P	T	K	D	E	Y	L	A	V	A	K	V	T	A	L	G	I	S	L	L	G	I	I	G	Y	I	I	H	V	P	A	T	Y	I	K	G	I	L	K	-	-
E	-	V	I	A	E	A	K	K	I	S	W	P	S	R	K	E	L	L	T	-	S	F	G	V	V	L	V	I	L	A	V	T	S	V	Y	F	F	V	L	D	F	I	F	S	G	V	V	S	A	I	F	K	A	L	G	I	G