PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1t3ua-  (   6 )     tltvqildkeycinCpdderanlesaaryldgkr-eirssgkvigadrv
d4p1ma-  (   4 )    qpvdiqifgrslrvnCppdqrdalnqaaddlnqrlqdlkertrvtnteql
                      bbbbb  bbbbb      aaaaaaaaaaaaa             aaaa

                             60        70        80        90        100 
d1t3ua-  (  55 )    av-aalnithdllhrkerldqessstrervrelldrvdralan       
d4p1ma-  (  54 )    vfiAalnisyelaqekaktrdyaasmeqrirmlqqtieqalleqgritek
                    a   aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa        

                          
d1t3ua-                   
d4p1ma-  ( 104 )    tnqnfe

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1t3ua- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1t3ua- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	ZapA homologue PA5227	Cell division protein ZapA-like	Pseudomonas aeruginosa [TaxId: 287]		view
d4p1ma- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4p1ma- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Escherichia coli [TaxId: 562]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100
-	T	L	T	V	Q	I	L	D	K	E	Y	C	I	N	C	P	D	D	E	R	A	N	L	E	S	A	A	R	Y	L	D	G	K	R	-	E	I	R	S	S	G	K	V	I	G	A	D	R	V	A	V	-	A	A	L	N	I	T	H	D	L	L	H	R	K	E	R	L	D	Q	E	S	S	S	T	R	E	R	V	R	E	L	L	D	R	V	D	R	A	L	A	N	-	-	-	-	-	-	-	-	-	-	-	-	-
Q	P	V	D	I	Q	I	F	G	R	S	L	R	V	N	C	P	P	D	Q	R	D	A	L	N	Q	A	A	D	D	L	N	Q	R	L	Q	D	L	K	E	R	T	R	V	T	N	T	E	Q	L	V	F	I	A	A	L	N	I	S	Y	E	L	A	Q	E	K	A	K	T	R	D	Y	A	A	S	M	E	Q	R	I	R	M	L	Q	Q	T	I	E	Q	A	L	L	E	Q	G	R	I	T	E	K	T	N	Q	N	F	E

Member	Chain	UniProtKB	GO term
d1t3ua_	A	Q9HTW3	GO:0000917
d1t3ua_	A	Q9HTW3	GO:0000921
d1t3ua_	A	Q9HTW3	GO:0005737
d1t3ua_	A	Q9HTW3	GO:0005829
d1t3ua_	A	Q9HTW3	GO:0030428
d1t3ua_	A	Q9HTW3	GO:0032153
d1t3ua_	A	Q9HTW3	GO:0043093
d1t3ua_	A	Q9HTW3	GO:0051301

									10										20										30										40										50										60										70										80										90										100
-	T	L	T	V	Q	I	L	D	K	E	Y	C	I	N	C	P	D	D	E	R	A	N	L	E	S	A	A	R	Y	L	D	G	K	R	-	E	I	R	S	S	G	K	V	I	G	A	D	R	V	A	V	-	A	A	L	N	I	T	H	D	L	L	H	R	K	E	R	L	D	Q	E	S	S	S	T	R	E	R	V	R	E	L	L	D	R	V	D	R	A	L	A	N	-	-	-	-	-	-	-	-	-	-	-	-	-
Q	P	V	D	I	Q	I	F	G	R	S	L	R	V	N	C	P	P	D	Q	R	D	A	L	N	Q	A	A	D	D	L	N	Q	R	L	Q	D	L	K	E	R	T	R	V	T	N	T	E	Q	L	V	F	I	A	A	L	N	I	S	Y	E	L	A	Q	E	K	A	K	T	R	D	Y	A	A	S	M	E	Q	R	I	R	M	L	Q	Q	T	I	E	Q	A	L	L	E	Q	G	R	I	T	E	K	T	N	Q	N	F	E

									10										20										30										40										50										60										70										80										90										100
-	T	L	T	V	Q	I	L	D	K	E	Y	C	I	N	C	P	D	D	E	R	A	N	L	E	S	A	A	R	Y	L	D	G	K	R	-	E	I	R	S	S	G	K	V	I	G	A	D	R	V	A	V	-	A	A	L	N	I	T	H	D	L	L	H	R	K	E	R	L	D	Q	E	S	S	S	T	R	E	R	V	R	E	L	L	D	R	V	D	R	A	L	A	N	-	-	-	-	-	-	-	-	-	-	-	-	-
Q	P	V	D	I	Q	I	F	G	R	S	L	R	V	N	C	P	P	D	Q	R	D	A	L	N	Q	A	A	D	D	L	N	Q	R	L	Q	D	L	K	E	R	T	R	V	T	N	T	E	Q	L	V	F	I	A	A	L	N	I	S	Y	E	L	A	Q	E	K	A	K	T	R	D	Y	A	A	S	M	E	Q	R	I	R	M	L	Q	Q	T	I	E	Q	A	L	L	E	Q	G	R	I	T	E	K	T	N	Q	N	F	E

									10										20										30										40										50										60										70										80										90										100
-	T	L	T	V	Q	I	L	D	K	E	Y	C	I	N	C	P	D	D	E	R	A	N	L	E	S	A	A	R	Y	L	D	G	K	R	-	E	I	R	S	S	G	K	V	I	G	A	D	R	V	A	V	-	A	A	L	N	I	T	H	D	L	L	H	R	K	E	R	L	D	Q	E	S	S	S	T	R	E	R	V	R	E	L	L	D	R	V	D	R	A	L	A	N	-	-	-	-	-	-	-	-	-	-	-	-	-
Q	P	V	D	I	Q	I	F	G	R	S	L	R	V	N	C	P	P	D	Q	R	D	A	L	N	Q	A	A	D	D	L	N	Q	R	L	Q	D	L	K	E	R	T	R	V	T	N	T	E	Q	L	V	F	I	A	A	L	N	I	S	Y	E	L	A	Q	E	K	A	K	T	R	D	Y	A	A	S	M	E	Q	R	I	R	M	L	Q	Q	T	I	E	Q	A	L	L	E	Q	G	R	I	T	E	K	T	N	Q	N	F	E