BASE   PART 1   PART 2  
Superfamily : 102405 [ MCP/YpsA-like ]
Class : Alpha and beta proteins (a/b)
Fold : MCP/YpsA-like
# of Members : 6
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1rcua-  (   2 )         kkVVVVGys-----g-pvnkspVselrdiCleLGrtLAkkgylVf
d1t35a-  (   2 )         kticvfags-----npg----gneaykrkaaeLGvy-AeqgigLV
d1weha-  (   2 )         rlLAVFvss-----rlspe----dplyarWvrYGeVLAeegFgLA
d2nx2a1  (   2 )         kvLAITGYkpfelgifkqddkaLyyIkkaIknrLiafLdegLewI
d2q4oa-  (   9 )    qkSkFrrICVfcgs-----sqg----kkssyqdaAvdLGneLvsrnIdLV
d3quaa-  (  16 )       rqwAVCVYCAs-----gpt-----hpeLleLAaeVGssIAargwtLV
                          bbbbb                  aaaaaaaaaaaaaa    bbb

                             60        70        80        90        100 
d1rcua-  (  41 )    ngGr-dGV-eLVSqGVrea-----ggtVvGILPdee-----aGNpyLsva
d1t35a-  (  38 )    yggsrvGL-gtiAdaI-en-----ggtaiGV-psglfsgevv-hqnLtel
d1weha-  (  38 )    cgGY-qGG-eALArGVkak-----gglVvGVTApaffperrgpNpfVdle
d2nx2a1  (  47 )    LISGqlGVELWAAeAAydlqeeypdLkVaVitPFy--eqeknwk------
d2q4oa-  (  50 )    ygggsiGL-glVSqaVhdg-----grhVIGIipkt----------lvgev
d3quaa-  (  53 )    SgGGnvSAMgaVAqaArak-----gghTVGVIPkalvhrela-DvdAael
                    b         aaaaaaa          bbb                  bb

                             110       120       130       140       150 
d1rcua-  (  80 )    vktgldfqrSfvLLrnAdVVVSIGGe-----igTaieIlgAYal------
d1t35a-  (  82 )    ievng-herkaks-elAdgfIS-pgg-----fgTyeelfevlcwaqig-i
d1weha-  (  82 )    lpAatlpqrigrLldlGaGYLALpgg-----vgTlaeLvlAwnllylrrg
d2nx2a1  (  89 )    ---epnkeqYeaVlaqAdyeaSlthrpyesplQfkqKnqfFId-------
d2q4oa-  (  94 )    ravad-hqrkaea-khSdAFIALPgg-----ygTleeLleVitwaqlg-i
d3quaa-  (  97 )    ivtdt-mrRkreMehrSdAFIALPGg-----igTleeFfeawtagylg-m
                             aa       bbbb         aaaaaaaaaaaa       

                             160       170       180       190       200 
d1rcua-  ( 120 )    -gkpVILLrgTg--gwTdrISqvLid---gkyLdnrriveIhqAwtVeeA
d1t35a-  ( 126 )    hqkpIglYn-Vn--gyFep---kvkysiqegfsneshlklihsssrPdeL
d1weha-  ( 127 )    vGrpLAVd---------pyWlgllkah-ge--iapedvglLrvVadeedL
d2nx2a1  ( 129 )    kSdGLLLLYdpekegsPkyMlgtAekrreqd--------gYpIyfItmdd
d2q4oa-  ( 138 )    hdkpVGLLn-Vd--gyYnsllsfidkaveegfisptareiIvsAptAkeL
d3quaa-  ( 141 )    hdkpLILLD-pf--ghYdglLtwLrglvptgyvsqramdsLvvvdnv-aA
                        bbbb                                 bbb   aaa

                           
d1rcua-  ( 164 )    VqiIeqi
d1t35a-  ( 173 )    ieqqny 
d1weha-  ( 165 )    rrFLrsl
d2nx2a1  ( 171 )    lrvtvee
d2q4oa-  ( 185 )    VkkLee 
d3quaa-  ( 188 )    LeaCap 
                    aaaa
 

 

Domain IDNameFamilySourceDomainSTRING-DB
Hypothetical protein TM1055MoCo carrier protein-likeThermotoga maritima [TaxId: 2336]view
Hypothetical protein YvdDMoCo carrier protein-likeBacillus subtilis [TaxId: 1423]view
Hypothetical protein TT1887 (TTHA0294)MoCo carrier protein-likeThermus thermophilus [TaxId: 274]view
Hypothetical protein YpsAYpsA-likeBacillus subtilis [TaxId: 1423]view
Hypothetical protein At2g37210/T2N18.3MoCo carrier protein-likeThale cress (Arabidopsis thaliana) [TaxId: 3702]view
automated matchesautomated matchesMycobacterium smegmatis [TaxId: 246196]view

 

No outliers

FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200
- - - - - K K V V V V G Y S - - - - - G - P V N K S P V S E L R D I C L E L G R T L A K K G Y L V F N G G R - D G V - E L V S Q G V R E A - - - - - G G T V V G I L P D E E - - - - - A G N P Y L S V A V K T G L D F Q R S F V L L R N A D V V V S I G G E - - - - - I G T A I E I L G A Y A L - - - - - - - G K P V I L L R G T G - - G W T D R I S Q V L I D - - - G K Y L D N R R I V E I H Q A W T V E E A V Q I I E Q I
- - - - - K T I C V F A G S - - - - - N P G - - - - G N E A Y K R K A A E L G V Y - A E Q G I G L V Y G G S R V G L - G T I A D A I - E N - - - - - G G T A I G V - P S G L F S G E V V - H Q N L T E L I E V N G - H E R K A K S - E L A D G F I S - P G G - - - - - F G T Y E E L F E V L C W A Q I G - I H Q K P I G L Y N - V N - - G Y F E P - - - K V K Y S I Q E G F S N E S H L K L I H S S S R P D E L I E Q Q N Y -
- - - - - R L L A V F V S S - - - - - R L S P E - - - - D P L Y A R W V R Y G E V L A E E G F G L A C G G Y - Q G G - E A L A R G V K A K - - - - - G G L V V G V T A P A F F P E R R G P N P F V D L E L P A A T L P Q R I G R L L D L G A G Y L A L P G G - - - - - V G T L A E L V L A W N L L Y L R R G V G R P L A V D - - - - - - - - - P Y W L G L L K A H - G E - - I A P E D V G L L R V V A D E E D L R R F L R S L
- - - - - K V L A I T G Y K P F E L G I F K Q D D K A L Y Y I K K A I K N R L I A F L D E G L E W I L I S G Q L G V E L W A A E A A Y D L Q E E Y P D L K V A V I T P F Y - - E Q E K N W K - - - - - - - - - E P N K E Q Y E A V L A Q A D Y E A S L T H R P Y E S P L Q F K Q K N Q F F I D - - - - - - - K S D G L L L L Y D P E K E G S P K Y M L G T A E K R R E Q D - - - - - - - - G Y P I Y F I T M D D L R V T V E E
Q K S K F R R I C V F C G S - - - - - S Q G - - - - K K S S Y Q D A A V D L G N E L V S R N I D L V Y G G G S I G L - G L V S Q A V H D G - - - - - G R H V I G I I P K T - - - - - - - - - - L V G E V R A V A D - H Q R K A E A - K H S D A F I A L P G G - - - - - Y G T L E E L L E V I T W A Q L G - I H D K P V G L L N - V D - - G Y Y N S L L S F I D K A V E E G F I S P T A R E I I V S A P T A K E L V K K L E E -
- - - R Q W A V C V Y C A S - - - - - G P T - - - - - H P E L L E L A A E V G S S I A A R G W T L V S G G G N V S A M G A V A Q A A R A K - - - - - G G H T V G V I P K A L V H R E L A - D V D A A E L I V T D T - M R R K R E M E H R S D A F I A L P G G - - - - - I G T L E E F F E A W T A G Y L G - M H D K P L I L L D - P F - - G H Y D G L L T W L R G L V P T G Y V S Q R A M D S L V V V D N V - A A L E A C A P -

 

 

 

 

 

Member Chain UniProtKB GO term
d1rcua_ A Q9X0E5 GO:0005829
d1rcua_ A Q9X0E5 GO:0005829
d1t35a_ A O06986 GO:0005829
d1t35a_ A O06986 GO:0009691
d1t35a_ A O06986 GO:0016787
d1t35a_ A O06986 GO:0016799
d1t35a_ A O06986 GO:0005829
d1t35a_ A O06986 GO:0009691
d1t35a_ A O06986 GO:0016787
d1t35a_ A O06986 GO:0016799
d1weha_ A Q5SLJ9 GO:0005829
d1weha_ A Q5SLJ9 GO:0016020
d1weha_ A Q5SLJ9 GO:0005829
d1weha_ A Q5SLJ9 GO:0016020
 
Contact: Prof. R. Sowdhamini - mini@ncbs.res.in