PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1un8a1  ( 336 )    itcvvsshasarvefqpsanalvagivelvtatlsdlethLnaLdakvgd
d3cr3a1  (   1 )                    lLtidtTieWLgkfnekiqenkayLseldgpIgd
d3pnlb1  (   2 )                    sLsrtqIvnWLtrCgdiFsteseyLtgldreIGd
                                        aaaaaaaaaaaaaaaa aaaaaaa      

                             60        70        80        90        100 
d1un8a1  ( 386 )    gdtGstfAaaareiasllhrqqLPlnnlatLfaLiGerLtvvMggssGvl
d3cr3a1  (  35 )    gdhGan-arG-set-kale--vsnFgnVseIFkkVA-tl-skVggasGpl
d3pnlb1  (  36 )    adhGlnMnrGFskVvekLp--aiadkdIGfILknTGmtLlssVggasGpl
                                    a          aaaaaaaa           aaaa

                             110       120       130       140       150 
d1un8a1  ( 436 )    msiFftaAGqkleq--gan---vveAlntGLaqMkfyggadegdrtmIDA
d3cr3a1  (  83 )    ygsAfla-SktAi--etld---tselIyaGleaiqkrgkAqvgeKt-VdI
d3pnlb1  (  84 )    FGTFFirAAqaTqarqsLtleeLyqMFrdGAdGVisrgkAepgDKtMCdV
                    aaaaaa                aaaaaaaaaaaaaaaa          aa

                             160       170       180       190       200 
d1un8a1  ( 481 )    LqpALtsllaqp-------knlqaAfdaAqaGAerTCl------sSkana
d3cr3a1  ( 128 )    WsaFlndlqt-----------dsAskdnLekvVkaSagllAtkgrasylg
d3pnlb1  ( 134 )    WvpVvesLrqSseqnlsVpvALeaAssiAesaAqsTitmqArkgrasylg
                    aaaaaaaaa                aaaaaaaaaa               

                             210       220     
d1un8a1  ( 526 )    esllgnMdpgAq-lAmvfkalAese  
d3cr3a1  ( 167 )    erSighidpgTqSSAyLFeTLleVva 
d3pnlb1  ( 184 )    erSighqdPgATSVmFMMqmLalAAke
                                  aaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1un8a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1un8a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Citrobacter dihydroxyacetone kinase extra ATP-binding domain	DhaL-like	Citrobacter freundii [TaxId: 546]	view
d3cr3a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3cr3a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL	DhaL-like	Lactococcus lactis [TaxId: 1358]	view
d3pnlb1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3pnlb1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Escherichia coli K-12 [TaxId: 83333]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220
I	T	C	V	V	S	S	H	A	S	A	R	V	E	F	Q	P	S	A	N	A	L	V	A	G	I	V	E	L	V	T	A	T	L	S	D	L	E	T	H	L	N	A	L	D	A	K	V	G	D	G	D	T	G	S	T	F	A	A	A	A	R	E	I	A	S	L	L	H	R	Q	Q	L	P	L	N	N	L	A	T	L	F	A	L	I	G	E	R	L	T	V	V	M	G	G	S	S	G	V	L	M	S	I	F	F	T	A	A	G	Q	K	L	E	Q	-	-	G	A	N	-	-	-	V	V	E	A	L	N	T	G	L	A	Q	M	K	F	Y	G	G	A	D	E	G	D	R	T	M	I	D	A	L	Q	P	A	L	T	S	L	L	A	Q	P	-	-	-	-	-	-	-	K	N	L	Q	A	A	F	D	A	A	Q	A	G	A	E	R	T	C	L	-	-	-	-	-	-	S	S	K	A	N	A	E	S	L	L	G	N	M	D	P	G	A	Q	-	L	A	M	V	F	K	A	L	A	E	S	E	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	L	T	I	D	T	T	I	E	W	L	G	K	F	N	E	K	I	Q	E	N	K	A	Y	L	S	E	L	D	G	P	I	G	D	G	D	H	G	A	N	-	A	R	G	-	S	E	T	-	K	A	L	E	-	-	V	S	N	F	G	N	V	S	E	I	F	K	K	V	A	-	T	L	-	S	K	V	G	G	A	S	G	P	L	Y	G	S	A	F	L	A	-	S	K	T	A	I	-	-	E	T	L	D	-	-	-	T	S	E	L	I	Y	A	G	L	E	A	I	Q	K	R	G	K	A	Q	V	G	E	K	T	-	V	D	I	W	S	A	F	L	N	D	L	Q	T	-	-	-	-	-	-	-	-	-	-	-	D	S	A	S	K	D	N	L	E	K	V	V	K	A	S	A	G	L	L	A	T	K	G	R	A	S	Y	L	G	E	R	S	I	G	H	I	D	P	G	T	Q	S	S	A	Y	L	F	E	T	L	L	E	V	V	A	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	L	S	R	T	Q	I	V	N	W	L	T	R	C	G	D	I	F	S	T	E	S	E	Y	L	T	G	L	D	R	E	I	G	D	A	D	H	G	L	N	M	N	R	G	F	S	K	V	V	E	K	L	P	-	-	A	I	A	D	K	D	I	G	F	I	L	K	N	T	G	M	T	L	L	S	S	V	G	G	A	S	G	P	L	F	G	T	F	F	I	R	A	A	Q	A	T	Q	A	R	Q	S	L	T	L	E	E	L	Y	Q	M	F	R	D	G	A	D	G	V	I	S	R	G	K	A	E	P	G	D	K	T	M	C	D	V	W	V	P	V	V	E	S	L	R	Q	S	S	E	Q	N	L	S	V	P	V	A	L	E	A	A	S	S	I	A	E	S	A	A	Q	S	T	I	T	M	Q	A	R	K	G	R	A	S	Y	L	G	E	R	S	I	G	H	Q	D	P	G	A	T	S	V	M	F	M	M	Q	M	L	A	L	A	A	K	E

Member	Chain	UniProtKB	GO term
d1un8a1	A	P45510	GO:0004371
d1un8a1	A	P45510	GO:0005524
d1un8a1	A	P45510	GO:0005829
d1un8a1	A	P45510	GO:0006071
d1un8a1	A	P45510	GO:0008289
d1un8a1	A	P45510	GO:0016301
d1un8a1	A	P45510	GO:0016310
d1un8a1	A	P45510	GO:0016773
d1un8a1	A	P45510	GO:0019563
d1un8a1	A	P45510	GO:0019588
d1un8a1	A	P45510	GO:0046872
d1un8a1	A	P45510	GO:0004371
d1un8a1	A	P45510	GO:0005524
d1un8a1	A	P45510	GO:0005829
d1un8a1	A	P45510	GO:0006071
d1un8a1	A	P45510	GO:0008289
d1un8a1	A	P45510	GO:0016301
d1un8a1	A	P45510	GO:0016310
d1un8a1	A	P45510	GO:0016773
d1un8a1	A	P45510	GO:0019563
d1un8a1	A	P45510	GO:0019588
d1un8a1	A	P45510	GO:0046872
d3cr3a1	A	Q9CIV7	GO:0000287
d3cr3a1	A	Q9CIV7	GO:0004371
d3cr3a1	A	Q9CIV7	GO:0005524
d3cr3a1	A	Q9CIV7	GO:0005737
d3cr3a1	A	Q9CIV7	GO:0005829
d3cr3a1	A	Q9CIV7	GO:0006071
d3cr3a1	A	Q9CIV7	GO:0016301
d3cr3a1	A	Q9CIV7	GO:0016310
d3cr3a1	A	Q9CIV7	GO:0016772
d3cr3a1	A	Q9CIV7	GO:0019563
d3cr3a1	A	Q9CIV7	GO:0046872
d3cr3a1	A	Q9CIV7	GO:0047324
d3cr3a1	A	Q9CIV6	GO:0000287
d3cr3a1	A	Q9CIV6	GO:0004371
d3cr3a1	A	Q9CIV6	GO:0005524
d3cr3a1	A	Q9CIV6	GO:0005737
d3cr3a1	A	Q9CIV6	GO:0005829
d3cr3a1	A	Q9CIV6	GO:0006071
d3cr3a1	A	Q9CIV6	GO:0016301
d3cr3a1	A	Q9CIV6	GO:0016310
d3cr3a1	A	Q9CIV6	GO:0016772
d3cr3a1	A	Q9CIV6	GO:0019563
d3cr3a1	A	Q9CIV6	GO:0046872
d3cr3a1	A	Q9CIV6	GO:0047324

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220
I	T	C	V	V	S	S	H	A	S	A	R	V	E	F	Q	P	S	A	N	A	L	V	A	G	I	V	E	L	V	T	A	T	L	S	D	L	E	T	H	L	N	A	L	D	A	K	V	G	D	G	D	T	G	S	T	F	A	A	A	A	R	E	I	A	S	L	L	H	R	Q	Q	L	P	L	N	N	L	A	T	L	F	A	L	I	G	E	R	L	T	V	V	M	G	G	S	S	G	V	L	M	S	I	F	F	T	A	A	G	Q	K	L	E	Q	-	-	G	A	N	-	-	-	V	V	E	A	L	N	T	G	L	A	Q	M	K	F	Y	G	G	A	D	E	G	D	R	T	M	I	D	A	L	Q	P	A	L	T	S	L	L	A	Q	P	-	-	-	-	-	-	-	K	N	L	Q	A	A	F	D	A	A	Q	A	G	A	E	R	T	C	L	-	-	-	-	-	-	S	S	K	A	N	A	E	S	L	L	G	N	M	D	P	G	A	Q	-	L	A	M	V	F	K	A	L	A	E	S	E	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	L	T	I	D	T	T	I	E	W	L	G	K	F	N	E	K	I	Q	E	N	K	A	Y	L	S	E	L	D	G	P	I	G	D	G	D	H	G	A	N	-	A	R	G	-	S	E	T	-	K	A	L	E	-	-	V	S	N	F	G	N	V	S	E	I	F	K	K	V	A	-	T	L	-	S	K	V	G	G	A	S	G	P	L	Y	G	S	A	F	L	A	-	S	K	T	A	I	-	-	E	T	L	D	-	-	-	T	S	E	L	I	Y	A	G	L	E	A	I	Q	K	R	G	K	A	Q	V	G	E	K	T	-	V	D	I	W	S	A	F	L	N	D	L	Q	T	-	-	-	-	-	-	-	-	-	-	-	D	S	A	S	K	D	N	L	E	K	V	V	K	A	S	A	G	L	L	A	T	K	G	R	A	S	Y	L	G	E	R	S	I	G	H	I	D	P	G	T	Q	S	S	A	Y	L	F	E	T	L	L	E	V	V	A	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	L	S	R	T	Q	I	V	N	W	L	T	R	C	G	D	I	F	S	T	E	S	E	Y	L	T	G	L	D	R	E	I	G	D	A	D	H	G	L	N	M	N	R	G	F	S	K	V	V	E	K	L	P	-	-	A	I	A	D	K	D	I	G	F	I	L	K	N	T	G	M	T	L	L	S	S	V	G	G	A	S	G	P	L	F	G	T	F	F	I	R	A	A	Q	A	T	Q	A	R	Q	S	L	T	L	E	E	L	Y	Q	M	F	R	D	G	A	D	G	V	I	S	R	G	K	A	E	P	G	D	K	T	M	C	D	V	W	V	P	V	V	E	S	L	R	Q	S	S	E	Q	N	L	S	V	P	V	A	L	E	A	A	S	S	I	A	E	S	A	A	Q	S	T	I	T	M	Q	A	R	K	G	R	A	S	Y	L	G	E	R	S	I	G	H	Q	D	P	G	A	T	S	V	M	F	M	M	Q	M	L	A	L	A	A	K	E

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220
I	T	C	V	V	S	S	H	A	S	A	R	V	E	F	Q	P	S	A	N	A	L	V	A	G	I	V	E	L	V	T	A	T	L	S	D	L	E	T	H	L	N	A	L	D	A	K	V	G	D	G	D	T	G	S	T	F	A	A	A	A	R	E	I	A	S	L	L	H	R	Q	Q	L	P	L	N	N	L	A	T	L	F	A	L	I	G	E	R	L	T	V	V	M	G	G	S	S	G	V	L	M	S	I	F	F	T	A	A	G	Q	K	L	E	Q	-	-	G	A	N	-	-	-	V	V	E	A	L	N	T	G	L	A	Q	M	K	F	Y	G	G	A	D	E	G	D	R	T	M	I	D	A	L	Q	P	A	L	T	S	L	L	A	Q	P	-	-	-	-	-	-	-	K	N	L	Q	A	A	F	D	A	A	Q	A	G	A	E	R	T	C	L	-	-	-	-	-	-	S	S	K	A	N	A	E	S	L	L	G	N	M	D	P	G	A	Q	-	L	A	M	V	F	K	A	L	A	E	S	E	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	L	T	I	D	T	T	I	E	W	L	G	K	F	N	E	K	I	Q	E	N	K	A	Y	L	S	E	L	D	G	P	I	G	D	G	D	H	G	A	N	-	A	R	G	-	S	E	T	-	K	A	L	E	-	-	V	S	N	F	G	N	V	S	E	I	F	K	K	V	A	-	T	L	-	S	K	V	G	G	A	S	G	P	L	Y	G	S	A	F	L	A	-	S	K	T	A	I	-	-	E	T	L	D	-	-	-	T	S	E	L	I	Y	A	G	L	E	A	I	Q	K	R	G	K	A	Q	V	G	E	K	T	-	V	D	I	W	S	A	F	L	N	D	L	Q	T	-	-	-	-	-	-	-	-	-	-	-	D	S	A	S	K	D	N	L	E	K	V	V	K	A	S	A	G	L	L	A	T	K	G	R	A	S	Y	L	G	E	R	S	I	G	H	I	D	P	G	T	Q	S	S	A	Y	L	F	E	T	L	L	E	V	V	A	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	L	S	R	T	Q	I	V	N	W	L	T	R	C	G	D	I	F	S	T	E	S	E	Y	L	T	G	L	D	R	E	I	G	D	A	D	H	G	L	N	M	N	R	G	F	S	K	V	V	E	K	L	P	-	-	A	I	A	D	K	D	I	G	F	I	L	K	N	T	G	M	T	L	L	S	S	V	G	G	A	S	G	P	L	F	G	T	F	F	I	R	A	A	Q	A	T	Q	A	R	Q	S	L	T	L	E	E	L	Y	Q	M	F	R	D	G	A	D	G	V	I	S	R	G	K	A	E	P	G	D	K	T	M	C	D	V	W	V	P	V	V	E	S	L	R	Q	S	S	E	Q	N	L	S	V	P	V	A	L	E	A	A	S	S	I	A	E	S	A	A	Q	S	T	I	T	M	Q	A	R	K	G	R	A	S	Y	L	G	E	R	S	I	G	H	Q	D	P	G	A	T	S	V	M	F	M	M	Q	M	L	A	L	A	A	K	E

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220
I	T	C	V	V	S	S	H	A	S	A	R	V	E	F	Q	P	S	A	N	A	L	V	A	G	I	V	E	L	V	T	A	T	L	S	D	L	E	T	H	L	N	A	L	D	A	K	V	G	D	G	D	T	G	S	T	F	A	A	A	A	R	E	I	A	S	L	L	H	R	Q	Q	L	P	L	N	N	L	A	T	L	F	A	L	I	G	E	R	L	T	V	V	M	G	G	S	S	G	V	L	M	S	I	F	F	T	A	A	G	Q	K	L	E	Q	-	-	G	A	N	-	-	-	V	V	E	A	L	N	T	G	L	A	Q	M	K	F	Y	G	G	A	D	E	G	D	R	T	M	I	D	A	L	Q	P	A	L	T	S	L	L	A	Q	P	-	-	-	-	-	-	-	K	N	L	Q	A	A	F	D	A	A	Q	A	G	A	E	R	T	C	L	-	-	-	-	-	-	S	S	K	A	N	A	E	S	L	L	G	N	M	D	P	G	A	Q	-	L	A	M	V	F	K	A	L	A	E	S	E	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	L	T	I	D	T	T	I	E	W	L	G	K	F	N	E	K	I	Q	E	N	K	A	Y	L	S	E	L	D	G	P	I	G	D	G	D	H	G	A	N	-	A	R	G	-	S	E	T	-	K	A	L	E	-	-	V	S	N	F	G	N	V	S	E	I	F	K	K	V	A	-	T	L	-	S	K	V	G	G	A	S	G	P	L	Y	G	S	A	F	L	A	-	S	K	T	A	I	-	-	E	T	L	D	-	-	-	T	S	E	L	I	Y	A	G	L	E	A	I	Q	K	R	G	K	A	Q	V	G	E	K	T	-	V	D	I	W	S	A	F	L	N	D	L	Q	T	-	-	-	-	-	-	-	-	-	-	-	D	S	A	S	K	D	N	L	E	K	V	V	K	A	S	A	G	L	L	A	T	K	G	R	A	S	Y	L	G	E	R	S	I	G	H	I	D	P	G	T	Q	S	S	A	Y	L	F	E	T	L	L	E	V	V	A	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	L	S	R	T	Q	I	V	N	W	L	T	R	C	G	D	I	F	S	T	E	S	E	Y	L	T	G	L	D	R	E	I	G	D	A	D	H	G	L	N	M	N	R	G	F	S	K	V	V	E	K	L	P	-	-	A	I	A	D	K	D	I	G	F	I	L	K	N	T	G	M	T	L	L	S	S	V	G	G	A	S	G	P	L	F	G	T	F	F	I	R	A	A	Q	A	T	Q	A	R	Q	S	L	T	L	E	E	L	Y	Q	M	F	R	D	G	A	D	G	V	I	S	R	G	K	A	E	P	G	D	K	T	M	C	D	V	W	V	P	V	V	E	S	L	R	Q	S	S	E	Q	N	L	S	V	P	V	A	L	E	A	A	S	S	I	A	E	S	A	A	Q	S	T	I	T	M	Q	A	R	K	G	R	A	S	Y	L	G	E	R	S	I	G	H	Q	D	P	G	A	T	S	V	M	F	M	M	Q	M	L	A	L	A	A	K	E