PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ux5a-  (1350 )    kyprphkklkqlhwekldctdnsiwgtgkaekfaddlyekgvladlekaf
d1v9da-  ( 829 )                                                      
                                                                      

                             60        70        80        90        100 
d1ux5a-  (1400 )    aareikslaskrkedlqkitfLsrdisqqFginLhmYsslsvadLVkkIL
d1v9da-  ( 829 )                   vkelkvLdsktaqnLsifLgsf-rmpyqeIknVIL
                                           aaaaaaaaaa        aaaaaaaaa

                             110       120       130       140       150 
d1ux5a-  (1450 )    nCdrdFlqtpsVVeFLskseIieVsvnlarnYapYstdWegvrnledakp
d1v9da-  ( 863 )    eVneavL-tesmIqnLi---kqMPe---peqlkmLs---------elke-
                             aaaaaa     aa      aaa                   

                             160       170       180       190       200 
d1ux5a-  (1500 )    pekdpndLqraDqIYLqLMvNLesYWgSRMrALtvVtsyereyneLlakL
d1v9da-  ( 896 )    ---eyddLaeSEqFGVvMGtVp--rLrpRLnAIlFklqFseqvenikpeI
                             aaaaaaaa        aaaaaaaaaaa  aaaaaa  aaaa

                             210       220       230       240       250 
d1ux5a-  (1550 )    rkVdkAVsaLqeSdnLrnVfnvIlavgnfmndtskqaqgfkLstLqrLtf
d1v9da-  ( 941 )    vsVtaACeeLrkSenfssll----------------------sfLcklrd
                    aaaaaaaaaaa  aaaaa                                

                             260       270       280       290       300 
d1ux5a-  (1600 )    ikdttnsmtfLNyVEkiVrlnypsfndFlseLepVldVvkvsieqLvndC
d1v9da-  ( 993 )    tkSadqkmtlLhflAelcendhpeVlkFPdeLahVekASrVsaenLqksL
                             aaaaaaaaaaa              aaaa    aaaaaaaa

                             310       320       330       340       350 
d1ux5a-  (1650 )    kdFsqsIvnVersVeignLsdsskFHplDkVlikTlpvlpeArkkgdlLe
d1v9da-  (1043 )    dqMkkqIadverdvq----nFpaatdekdkFvekMtsfvkdAqeqynkLr
                    aaaaaaaaaaaaaaa               aaaaaaaaaaaaaaaaaaaa

                             360       370       380       390       400 
d1ux5a-  (1700 )    deVklTimeFesLMhtygedsgdkfakisFfkkFAdFIneYkkAqaqNla
d1v9da-  (1089 )    mmHsnMetlYkeLGdyfvfdpk-klsveefFmdlhnfrnmFlqAvkeNqk
                    aaaaaaaaaaaaaaaa          aaaaaaaaaaaaaaaaaaaaaaaa

                             410       420 
d1ux5a-  (1750 )    aeeeerlyikh            
d1v9da-  (1138 )    rreteekmrraklakekaekerl
                    aaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1ux5a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ux5a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Bni1	Formin homology 2 domain (FH2 domain)	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]		view
d1v9da- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1v9da- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Diaphanous protein homolog 1, dia1	Formin homology 2 domain (FH2 domain)	Mouse (Mus musculus) [TaxId: 10090]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term

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K	Y	P	R	P	H	K	K	L	K	Q	L	H	W	E	K	L	D	C	T	D	N	S	I	W	G	T	G	K	A	E	K	F	A	D	D	L	Y	E	K	G	V	L	A	D	L	E	K	A	F	A	A	R	E	I	K	S	L	A	S	K	R	K	E	D	L	Q	K	I	T	F	L	S	R	D	I	S	Q	Q	F	G	I	N	L	H	M	Y	S	S	L	S	V	A	D	L	V	K	K	I	L	N	C	D	R	D	F	L	Q	T	P	S	V	V	E	F	L	S	K	S	E	I	I	E	V	S	V	N	L	A	R	N	Y	A	P	Y	S	T	D	W	E	G	V	R	N	L	E	D	A	K	P	P	E	K	D	P	N	D	L	Q	R	A	D	Q	I	Y	L	Q	L	M	V	N	L	E	S	Y	W	G	S	R	M	R	A	L	T	V	V	T	S	Y	E	R	E	Y	N	E	L	L	A	K	L	R	K	V	D	K	A	V	S	A	L	Q	E	S	D	N	L	R	N	V	F	N	V	I	L	A	V	G	N	F	M	N	D	T	S	K	Q	A	Q	G	F	K	L	S	T	L	Q	R	L	T	F	I	K	D	T	T	N	S	M	T	F	L	N	Y	V	E	K	I	V	R	L	N	Y	P	S	F	N	D	F	L	S	E	L	E	P	V	L	D	V	V	K	V	S	I	E	Q	L	V	N	D	C	K	D	F	S	Q	S	I	V	N	V	E	R	S	V	E	I	G	N	L	S	D	S	S	K	F	H	P	L	D	K	V	L	I	K	T	L	P	V	L	P	E	A	R	K	K	G	D	L	L	E	D	E	V	K	L	T	I	M	E	F	E	S	L	M	H	T	Y	G	E	D	S	G	D	K	F	A	K	I	S	F	F	K	K	F	A	D	F	I	N	E	Y	K	K	A	Q	A	Q	N	L	A	A	E	E	E	E	R	L	Y	I	K	H	-	-	-	-	-	-	-	-	-	-	-	-
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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	K	E	L	K	V	L	D	S	K	T	A	Q	N	L	S	I	F	L	G	S	F	-	R	M	P	Y	Q	E	I	K	N	V	I	L	E	V	N	E	A	V	L	-	T	E	S	M	I	Q	N	L	I	-	-	-	K	Q	M	P	E	-	-	-	P	E	Q	L	K	M	L	S	-	-	-	-	-	-	-	-	-	E	L	K	E	-	-	-	-	E	Y	D	D	L	A	E	S	E	Q	F	G	V	V	M	G	T	V	P	-	-	R	L	R	P	R	L	N	A	I	L	F	K	L	Q	F	S	E	Q	V	E	N	I	K	P	E	I	V	S	V	T	A	A	C	E	E	L	R	K	S	E	N	F	S	S	L	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	F	L	C	K	L	R	D	T	K	S	A	D	Q	K	M	T	L	L	H	F	L	A	E	L	C	E	N	D	H	P	E	V	L	K	F	P	D	E	L	A	H	V	E	K	A	S	R	V	S	A	E	N	L	Q	K	S	L	D	Q	M	K	K	Q	I	A	D	V	E	R	D	V	Q	-	-	-	-	N	F	P	A	A	T	D	E	K	D	K	F	V	E	K	M	T	S	F	V	K	D	A	Q	E	Q	Y	N	K	L	R	M	M	H	S	N	M	E	T	L	Y	K	E	L	G	D	Y	F	V	F	D	P	K	-	K	L	S	V	E	E	F	F	M	D	L	H	N	F	R	N	M	F	L	Q	A	V	K	E	N	Q	K	R	R	E	T	E	E	K	M	R	R	A	K	L	A	K	E	K	A	E	K	E	R	L

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