PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1v2za1  ( 174 )    tafffrrmspadkrklldeLrsiYrtIVleyfnt---akvneIdeFVskA
d1w53a-  (   1 )                 mdfrevIeqryhqLlsryiaeltetslyqaqkfsrkT
                                  aaaaaaaaaaaaaaaa             aaaaaaa

                             60        70        80        90        100 
d1v2za1  ( 223 )    FfAdIsvsqVleIhvelmdtfskqlklegrsedilldyrlTlidViahLc
d1w53a-  (  38 )    iehqippeeiisIhrkVlkelyp--------slpedvFhsldflievmig
                    aa    aaaaaaaaaaaaaaa                aaaaaaaaaaaaa

                          
d1v2za1  ( 273 )    emyrrs
d1w53a-  (  80 )    yGma-y
                    aaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1v2za1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1v2za1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Circadian clock protein KaiA, C-terminal domain	Circadian clock protein KaiA, C-terminal domain	Thermosynechococcus elongatus bp-1 [TaxId: 197221]		view
d1w53a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1w53a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Phosphoserine phosphatase RsbU, N-terminal domain	Phosphoserine phosphatase RsbU, N-terminal domain	Bacillus subtilis [TaxId: 1423]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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T	A	F	F	F	R	R	M	S	P	A	D	K	R	K	L	L	D	E	L	R	S	I	Y	R	T	I	V	L	E	Y	F	N	T	-	-	-	A	K	V	N	E	I	D	E	F	V	S	K	A	F	F	A	D	I	S	V	S	Q	V	L	E	I	H	V	E	L	M	D	T	F	S	K	Q	L	K	L	E	G	R	S	E	D	I	L	L	D	Y	R	L	T	L	I	D	V	I	A	H	L	C	E	M	Y	R	R	S
-	-	-	-	-	-	-	-	-	-	-	-	-	M	D	F	R	E	V	I	E	Q	R	Y	H	Q	L	L	S	R	Y	I	A	E	L	T	E	T	S	L	Y	Q	A	Q	K	F	S	R	K	T	I	E	H	Q	I	P	P	E	E	I	I	S	I	H	R	K	V	L	K	E	L	Y	P	-	-	-	-	-	-	-	-	S	L	P	E	D	V	F	H	S	L	D	F	L	I	E	V	M	I	G	Y	G	M	A	-	Y

Member	Chain	UniProtKB	GO term
d1w53a_	A	P40399	GO:0006468

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-	-	-	-	-	-	-	-	-	-	-	-	-	M	D	F	R	E	V	I	E	Q	R	Y	H	Q	L	L	S	R	Y	I	A	E	L	T	E	T	S	L	Y	Q	A	Q	K	F	S	R	K	T	I	E	H	Q	I	P	P	E	E	I	I	S	I	H	R	K	V	L	K	E	L	Y	P	-	-	-	-	-	-	-	-	S	L	P	E	D	V	F	H	S	L	D	F	L	I	E	V	M	I	G	Y	G	M	A	-	Y

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