PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1orja1  (1002 )    rniaeAYfqnmvetatpleqIillYdkAIeCLerAieIydqvnelekrke
d3iqca-  (   4 )    anayqAYq------espAklIemlYegIlrfSsqAkrciene----diek
d5mawe-  (  10 )     yqqnsnt------atpgeltlmlYngCLkfIrlAaqAiend----dmer
                                    aaaaaaaaaaaaaaaaaaaaa          aaa

                             60        70        80        90        100 
d1orja1  (1052 )    fveNidrVydiIsaLksfLdhekGkeiAknldtiYtiIlntLvk--vdkt
d3iqca-  (  50 )    KiyyInrVtdiFteLlniLdyekGgevAvyLtglYthQikvLtqAnvend
d5mawe-  (  50 )    knenLikAqniIqeLnftlnrn--ielSasmGamYdyMyrrLvqAniknd
                    aaaaaaaaaaaaaaaaa          aaaaaaaaaaaaaaaa       

                             110       120     
d1orja1  (1100 )    keeLqkIleiLkdlreaWeevkkkv  
d3iqca-  ( 100 )    askIdlVlnvArglLeaWreihsdeLa
d5mawe-  (  98 )    tgmLaeVegyVtdfrdawkqai     
                    aaaaaaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1orja1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1orja1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Flagellar export chaperone FliS	Flagellar export chaperone FliS	Aquifex aeolicus [TaxId: 63363]	view
d3iqca- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3iqca- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Helicobacter pylori [TaxId: 85962]	view
d5mawe- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5mawe- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Bacillus subtilis [TaxId: 1423]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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R	N	I	A	E	A	Y	F	Q	N	M	V	E	T	A	T	P	L	E	Q	I	I	L	L	Y	D	K	A	I	E	C	L	E	R	A	I	E	I	Y	D	Q	V	N	E	L	E	K	R	K	E	F	V	E	N	I	D	R	V	Y	D	I	I	S	A	L	K	S	F	L	D	H	E	K	G	K	E	I	A	K	N	L	D	T	I	Y	T	I	I	L	N	T	L	V	K	-	-	V	D	K	T	K	E	E	L	Q	K	I	L	E	I	L	K	D	L	R	E	A	W	E	E	V	K	K	K	V	-	-
A	N	A	Y	Q	A	Y	Q	-	-	-	-	-	-	E	S	P	A	K	L	I	E	M	L	Y	E	G	I	L	R	F	S	S	Q	A	K	R	C	I	E	N	E	-	-	-	-	D	I	E	K	K	I	Y	Y	I	N	R	V	T	D	I	F	T	E	L	L	N	I	L	D	Y	E	K	G	G	E	V	A	V	Y	L	T	G	L	Y	T	H	Q	I	K	V	L	T	Q	A	N	V	E	N	D	A	S	K	I	D	L	V	L	N	V	A	R	G	L	L	E	A	W	R	E	I	H	S	D	E	L	A
-	Y	Q	Q	N	S	N	T	-	-	-	-	-	-	A	T	P	G	E	L	T	L	M	L	Y	N	G	C	L	K	F	I	R	L	A	A	Q	A	I	E	N	D	-	-	-	-	D	M	E	R	K	N	E	N	L	I	K	A	Q	N	I	I	Q	E	L	N	F	T	L	N	R	N	-	-	I	E	L	S	A	S	M	G	A	M	Y	D	Y	M	Y	R	R	L	V	Q	A	N	I	K	N	D	T	G	M	L	A	E	V	E	G	Y	V	T	D	F	R	D	A	W	K	Q	A	I	-	-	-	-	-

Member	Chain	UniProtKB	GO term

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R	N	I	A	E	A	Y	F	Q	N	M	V	E	T	A	T	P	L	E	Q	I	I	L	L	Y	D	K	A	I	E	C	L	E	R	A	I	E	I	Y	D	Q	V	N	E	L	E	K	R	K	E	F	V	E	N	I	D	R	V	Y	D	I	I	S	A	L	K	S	F	L	D	H	E	K	G	K	E	I	A	K	N	L	D	T	I	Y	T	I	I	L	N	T	L	V	K	-	-	V	D	K	T	K	E	E	L	Q	K	I	L	E	I	L	K	D	L	R	E	A	W	E	E	V	K	K	K	V	-	-
A	N	A	Y	Q	A	Y	Q	-	-	-	-	-	-	E	S	P	A	K	L	I	E	M	L	Y	E	G	I	L	R	F	S	S	Q	A	K	R	C	I	E	N	E	-	-	-	-	D	I	E	K	K	I	Y	Y	I	N	R	V	T	D	I	F	T	E	L	L	N	I	L	D	Y	E	K	G	G	E	V	A	V	Y	L	T	G	L	Y	T	H	Q	I	K	V	L	T	Q	A	N	V	E	N	D	A	S	K	I	D	L	V	L	N	V	A	R	G	L	L	E	A	W	R	E	I	H	S	D	E	L	A
-	Y	Q	Q	N	S	N	T	-	-	-	-	-	-	A	T	P	G	E	L	T	L	M	L	Y	N	G	C	L	K	F	I	R	L	A	A	Q	A	I	E	N	D	-	-	-	-	D	M	E	R	K	N	E	N	L	I	K	A	Q	N	I	I	Q	E	L	N	F	T	L	N	R	N	-	-	I	E	L	S	A	S	M	G	A	M	Y	D	Y	M	Y	R	R	L	V	Q	A	N	I	K	N	D	T	G	M	L	A	E	V	E	G	Y	V	T	D	F	R	D	A	W	K	Q	A	I	-	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110										120
R	N	I	A	E	A	Y	F	Q	N	M	V	E	T	A	T	P	L	E	Q	I	I	L	L	Y	D	K	A	I	E	C	L	E	R	A	I	E	I	Y	D	Q	V	N	E	L	E	K	R	K	E	F	V	E	N	I	D	R	V	Y	D	I	I	S	A	L	K	S	F	L	D	H	E	K	G	K	E	I	A	K	N	L	D	T	I	Y	T	I	I	L	N	T	L	V	K	-	-	V	D	K	T	K	E	E	L	Q	K	I	L	E	I	L	K	D	L	R	E	A	W	E	E	V	K	K	K	V	-	-
A	N	A	Y	Q	A	Y	Q	-	-	-	-	-	-	E	S	P	A	K	L	I	E	M	L	Y	E	G	I	L	R	F	S	S	Q	A	K	R	C	I	E	N	E	-	-	-	-	D	I	E	K	K	I	Y	Y	I	N	R	V	T	D	I	F	T	E	L	L	N	I	L	D	Y	E	K	G	G	E	V	A	V	Y	L	T	G	L	Y	T	H	Q	I	K	V	L	T	Q	A	N	V	E	N	D	A	S	K	I	D	L	V	L	N	V	A	R	G	L	L	E	A	W	R	E	I	H	S	D	E	L	A
-	Y	Q	Q	N	S	N	T	-	-	-	-	-	-	A	T	P	G	E	L	T	L	M	L	Y	N	G	C	L	K	F	I	R	L	A	A	Q	A	I	E	N	D	-	-	-	-	D	M	E	R	K	N	E	N	L	I	K	A	Q	N	I	I	Q	E	L	N	F	T	L	N	R	N	-	-	I	E	L	S	A	S	M	G	A	M	Y	D	Y	M	Y	R	R	L	V	Q	A	N	I	K	N	D	T	G	M	L	A	E	V	E	G	Y	V	T	D	F	R	D	A	W	K	Q	A	I	-	-	-	-	-

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R	N	I	A	E	A	Y	F	Q	N	M	V	E	T	A	T	P	L	E	Q	I	I	L	L	Y	D	K	A	I	E	C	L	E	R	A	I	E	I	Y	D	Q	V	N	E	L	E	K	R	K	E	F	V	E	N	I	D	R	V	Y	D	I	I	S	A	L	K	S	F	L	D	H	E	K	G	K	E	I	A	K	N	L	D	T	I	Y	T	I	I	L	N	T	L	V	K	-	-	V	D	K	T	K	E	E	L	Q	K	I	L	E	I	L	K	D	L	R	E	A	W	E	E	V	K	K	K	V	-	-
A	N	A	Y	Q	A	Y	Q	-	-	-	-	-	-	E	S	P	A	K	L	I	E	M	L	Y	E	G	I	L	R	F	S	S	Q	A	K	R	C	I	E	N	E	-	-	-	-	D	I	E	K	K	I	Y	Y	I	N	R	V	T	D	I	F	T	E	L	L	N	I	L	D	Y	E	K	G	G	E	V	A	V	Y	L	T	G	L	Y	T	H	Q	I	K	V	L	T	Q	A	N	V	E	N	D	A	S	K	I	D	L	V	L	N	V	A	R	G	L	L	E	A	W	R	E	I	H	S	D	E	L	A
-	Y	Q	Q	N	S	N	T	-	-	-	-	-	-	A	T	P	G	E	L	T	L	M	L	Y	N	G	C	L	K	F	I	R	L	A	A	Q	A	I	E	N	D	-	-	-	-	D	M	E	R	K	N	E	N	L	I	K	A	Q	N	I	I	Q	E	L	N	F	T	L	N	R	N	-	-	I	E	L	S	A	S	M	G	A	M	Y	D	Y	M	Y	R	R	L	V	Q	A	N	I	K	N	D	T	G	M	L	A	E	V	E	G	Y	V	T	D	F	R	D	A	W	K	Q	A	I	-	-	-	-	-