3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14450

Details:

PFam ID : PF14450

PFam Domain Description : Cell division protein FtsA

Number of Sequence in 50% Dataset : 222

Number of Sequence in Full Dataset : 1381

Average sequence length: 176.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14450	D1C5A1_SPHTD_7_125	61.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14450	B0L8V5_9DELT_2_50	54

Sequence based PCA Plot of the family - PF14450 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=20
Motif2 Start=52 Length=8
Motif3 Start=69 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay