3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14449

Details:

PFam ID : PF14449

PFam Domain Description : A pre-toxin domain with the TG motif

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 108

Average sequence length: 76.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14449	C3AVI2_BACMY_227_308	18.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14449	E7M4T4_9BACL_209_293	92.5

Sequence based PCA Plot of the family - PF14449 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay