3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14448

Details:

PFam ID : PF14448

PFam Domain Description : A short region before toxin nuclease domain

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 13

Average sequence length: 50.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14448	C2M585_CAPGI_128_180	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14448	E5W7B3_9BACI_338_392	100

Sequence based PCA Plot of the family - PF14448 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay