3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14441

Details:

PFam ID : PF14441

PFam Domain Description : Orientia OTT_1508-like deaminase

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 116

Average sequence length: 163.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14441	A4RCT8_MAGO7_565_735	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14441	B0DG84_LACBS_27_271	99.1

Sequence based PCA Plot of the family - PF14441 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=95 Length=8
Motif4 Start=117 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay